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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G20160 | AT | Annotation by Michelle Graham. TAIR10: Subtilisin-like serine endopeptidase family protein | chr1:6990852-6993737 REVERSE LENGTH=730 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0043086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| PTHR10795 | Panther | SUBTILISIN/KEXIN-RELATED SERINE PROTEASE | JGI | ISS | |
| PTHR10795:SF17 | Panther | gb def: possible protease [sinorhizobium meliloti] | JGI | ISS | |
| PF00082 | PFAM | Subtilase family | JGI | ISS | |
| PF02225 | PFAM | PA domain | JGI | ISS | |
| UniRef100_I1JT11 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT11_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q93WQ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Subtilisin-type protease n=1 Tax=Glycine max RepID=Q93WQ0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g02458 not represented in the dataset |
Glyma04g02458 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g02491 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g022500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g02458.1 sequence type=CDS gene model=Glyma04g02458 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACATCAAAAGACTTCAATTCCTCTAATTGTAACAGGAAGCTAATTGGCGCAAGGTTTTACCCTGACCCTGATGGGAAGAATGATGACAATGACAAAACGCCAAGGGATTCGAACGGACATGGGACCCACGTGGCGTCAACGGCGGTGTGTGTGGCTGTGAGCAACGCATCGTTCTATGGTCTAGCCACGGGGACCGCGAAGGGTGGGTCCCCCGAGTCAAGATTGGCAGTTTACAAAGTGTGTTATAGGAATGGGTGTCGTGGATCAGCCATCCTGGCGGCGTTTGATGATGCCATTGCCGACGGAGTGGATGTGTTGTCGCTATCGCTGGGCGTATTACCTCTTTCCCGACCAAAGTTGACATCCGACACGATTGCTATTGGAGCATTCCACGCCGTGCAGCGCGGCATCTTGGTGGTCTGCGCCGCTGGGAATGCCGGACCTCTCAAGTACTCAGTTGTAAACGATGCACCTTGGATTTTAACCGTTGCAGCTTCCACCATCGATCGGGATCTTCAGTCCAACGTCGTCTTGGGTACTAACCACGTCGTCAAGGGCAGAGCCATTAATTTCTCCCCTCTTTCAAATTCTCCCGAGTATCCAATGGTATATGGTGAGTCTGCCAAGGCAAAAAGAGCCAACTTAGGTACAGCAAGAAAATGCCACCCAAATTCATTAGATAGAAATAAAGTCAAAGGGAAGATTGTGATTTGCGATGGCAAAAAGGATCCGAAATATATAACTATGGAAAAAATTAACATAGTGAAAGCGGCAGGAGGAATTGGTCTGGCTCATATTACTGATCAAGATGGATCAGTAGCATTTAATTATGTGGACTTCCCGGCAACAGAGATAAGTTCAAAAGATGGCGTCGCACTCCTGCAGTATATCAATTCAACCAGCAATCCAGTGGGAACAATACTAGCTACAGTTACAGTTCCTGATTATAAGCCTGCTCCCGTGGTGGGTTTCTTTTCATCAAGAGGGCCTTCAACGCTTTCAAGCAATATTCTCAAGCCTGATATTGCCGCACCGGGAGTGAACATTCTCGCTGCATGGATAGGAGATGACACATCAGAGGTTCCAAAAGGAAGAAAGCCCTCACTATACAACATAATCTCAGGAACTTCCATGGCTACTCCACATGTTTCAGGGCTTGTATGCAGTGTGAAAACACAGAACCCCTCTTGGAGTGCCTCTGCAATCAAATCTGCCATCATGACTTCTGCAATTCAAAATGACAACTTGAAGGCTCCCATAACAACGGATTCAGGGTCGATAGCCACACCCTATGACTATGGAGCAGGGGAAATTACAACATCTAAACCATTGCAACCAGGGCTAGTTTATGAAACTAACACCGTTGATTACTTGAACTATTTGTGTTACACTGGTCATAACCTAACCACGGTTAAGGTCATCTCCGGAACTGTCCCCGATAATTTCAATTGCCCCAAGGATTCCACCTCTGATCTCATATCCAACATCAACTACCCTTCCATAGCAGTAAACTTCACTGGCAAAGCAAACGTGGTCGTGAGCAGAACTGTCACAAACGTTGCCGAAGAAGATGAAACAGTGTACTCTGCCGTTGTCGAAGCTCCCAAAGGAGTATTTGTCAAAGTGACTCCAAATAAACTTCAGTTTACGAAAAGTAGTAAAAAATTAAGCTACCAAGTTATTTTCGCACCAAAGGCCTCCTTGAGGAAAGATTTGTTTGGATCTATCACTTGGAGTAACGGCAAATATATAGTTCGAAGTCCATTT
>Glyma04g02458.1 sequence type=predicted peptide gene model=Glyma04g02458 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSKDFNSSNCNRKLIGARFYPDPDGKNDDNDKTPRDSNGHGTHVASTAVCVAVSNASFYGLATGTAKGGSPESRLAVYKVCYRNGCRGSAILAAFDDAIADGVDVLSLSLGVLPLSRPKLTSDTIAIGAFHAVQRGILVVCAAGNAGPLKYSVVNDAPWILTVAASTIDRDLQSNVVLGTNHVVKGRAINFSPLSNSPEYPMVYGESAKAKRANLGTARKCHPNSLDRNKVKGKIVICDGKKDPKYITMEKINIVKAAGGIGLAHITDQDGSVAFNYVDFPATEISSKDGVALLQYINSTSNPVGTILATVTVPDYKPAPVVGFFSSRGPSTLSSNILKPDIAAPGVNILAAWIGDDTSEVPKGRKPSLYNIISGTSMATPHVSGLVCSVKTQNPSWSASAIKSAIMTSAIQNDNLKAPITTDSGSIATPYDYGAGEITTSKPLQPGLVYETNTVDYLNYLCYTGHNLTTVKVISGTVPDNFNCPKDSTSDLISNINYPSIAVNFTGKANVVVSRTVTNVAEEDETVYSAVVEAPKGVFVKVTPNKLQFTKSSKKLSYQVIFAPKASLRKDLFGSITWSNGKYIVRSPF
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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