Glyma04g02446 - SoyBase

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Report for Sequence Feature Glyma04g02446

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1711538
stop:	1717587
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02446

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20160	AT	Annotation by Michelle Graham. TAIR10: Subtilisin-like serine endopeptidase family protein \| chr1:6990852-6993737 REVERSE LENGTH=730	SoyBase	E_val: 6.00E-67	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0043086	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PTHR10795	Panther	SUBTILISIN/KEXIN-RELATED SERINE PROTEASE	JGI		ISS
PTHR10795:SF17	Panther	gb def: possible protease [sinorhizobium meliloti]	JGI		ISS
PF00082	PFAM	Subtilase family	JGI		ISS
PF02225	PFAM	PA domain	JGI		ISS
UniRef100_I1JT09	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JT09_SOYBN	SoyBase	E_val: 4.00E-144	ISS
UniRef100_Q94KL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Subtilisin-like protein n=1 Tax=Glycine max RepID=Q94KL9_SOYBN	SoyBase	E_val: 3.00E-113	ISS

Expression Patterns of Glyma04g02446

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g02446 not represented in the dataset	Glyma04g02446 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g02446 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g02446

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02446

Limit To All Plant Sequences

>Glyma04g02446.1   sequence type=CDS   gene model=Glyma04g02446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGTCATCGGCAGGGATTAGTTGGTAACGATGACACGAACCGTAAAGAAGTTTATATCGTGTACATGGGAGCCGCGGATTCAACCAATGCAGCTTACTTTCGGAATGACCACGCTCAGGTTATCAATTCAGTGCTACTAGGTATATGGCCAGAGGCGGCGAGTTTTAGCGACAAGGACTTCAATTCCTCCAATTGTAACAGGAAGCTAATTGGCGCAAGGTATTACGTGGACCCTAATGAAGGGGGCGACAACATGGCAAGGGATTCTACCATTCTTGCCGCACTTGACGATGCCATTGAGGACGGAGTGGATGTGTTGTCGGTGTCGTTGGGTGCATCCACTGGGTTTCGACCCGACTTGACGTCCGATCCAATTGCGATTGGAGCATTCCACGCTGTGGAGCGTGGCATCCTCGTTGTGTGCTTTGTTGGGAACGATGGACCAAGCTCGTACACGCTTGTTAATGACGCGCCTTGGATTTTAACCGTTGCAGCTTCCACCATTGATCGGGATTTTCAGTCCAACGTCGTCTTGGGTGTTAACAAAATCATCAAGCAAAAAATTAAATCATTTGTTAAATGCAGACAATGCCATCCAAATTCATTAGATGTGAATAAAGTCAAAGGGAAGATTGTGGTCTGTGAAGGCAAAAATGATAAATATTCAACTAGAAAAAAAGTTATCACGGTGAAAGCGGTAGGAGGAATAGGCCTGGTTCATATTACTGATCAAAATGGAGCAATAGCATCAAATTATGGGGACTTCCCAGCAACAGTGATAAGCTCAAAAGATGGCATCACAATCCTACAGTACATCAATTCAACCAGGGCCTTCATCGCTTTCAAGCAATATTCTCAAGGGGAAATGGCAACATCTGAACCATTGCAACCAGGACTAGTTTATGAAACCAGCACCATTGACTACTTGAACTTCTTGTGTTACATTGGATTCAACGTAACCGCGGTCAAAGTCATCTCCAAAACTGTCCCTCATAATTTCAATTGCCCCAAGGATTTGAGCTCTGATCATGTCTCTAACATCAACTACCCTTCCATAGCAATAAACTTCAGTGGCAAAAGAGCCGTGAACGTGAGTAGAACTGTCACAAACGTTGGTGAAGAAGATGAAACAGATCTTTCTTCTTCTTTTTTGTTATCATGGCAAATTCATACCAAACGCCTCATATATCCAATAAGCTTTGTAAACAAAGGTGCTGCCTCTCCTTACATGCCTCTCATCATCGTTGTTATTGCG

Predicted protein sequences of Glyma04g02446

Limit To All Plant Sequences

>Glyma04g02446.1   sequence type=predicted peptide   gene model=Glyma04g02446   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSHRQGLVGNDDTNRKEVYIVYMGAADSTNAAYFRNDHAQVINSVLLGIWPEAASFSDKDFNSSNCNRKLIGARYYVDPNEGGDNMARDSTILAALDDAIEDGVDVLSVSLGASTGFRPDLTSDPIAIGAFHAVERGILVVCFVGNDGPSSYTLVNDAPWILTVAASTIDRDFQSNVVLGVNKIIKQKIKSFVKCRQCHPNSLDVNKVKGKIVVCEGKNDKYSTRKKVITVKAVGGIGLVHITDQNGAIASNYGDFPATVISSKDGITILQYINSTRAFIAFKQYSQGEMATSEPLQPGLVYETSTIDYLNFLCYIGFNVTAVKVISKTVPHNFNCPKDLSSDHVSNINYPSIAINFSGKRAVNVSRTVTNVGEEDETDLSSSFLLSWQIHTKRLIYPISFVNKGAASPYMPLIIVVIA

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