Glyma04g02420 - SoyBase

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Report for Sequence Feature Glyma04g02420

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1680703
stop:	1683111
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35900	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr4:17004746-17005952 FORWARD LENGTH=285	SoyBase	E_val: 1.00E-17	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009648	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF45	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_Q0GPI1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP46 n=1 Tax=Glycine max RepID=Q0GPI1_SOYBN	SoyBase	E_val: 1.00E-130	ISS
UniRef100_Q0GPI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: BZIP transcription factor bZIP46 n=1 Tax=Glycine max RepID=Q0GPI1_SOYBN	SoyBase	E_val: 1.00E-130	ISS

Expression Patterns of Glyma04g02420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02420

Paralog	Evidence	Comments
Glyma06g02470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g022100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02420

Limit To All Plant Sequences

>Glyma04g02420.1   sequence type=CDS   gene model=Glyma04g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCATGGCCACCCAAACCTACAGAGATTTTTTGTGTGCATGCGAGGGAGAAAGCGATGGCCTCATCGCCATGTGATTGCTGGCCCCATCTCTCTCCTCCTTCTTCCATTGAGCATGTCTGGAACGACATCAAACTCGACTCTCTCTCCAATTCCCCTGTTGACATAGACTTCAACAACAACCACTCTGTCTCTGATTCTTCTTTTCTTAACCTCACTTCCACTTCCTCTTCTGTCTTTCACAAACATGACCATGACCACTCTCTTCTTTCTGTCTCCAACACTTCCTTCGAAGCCTCCGGCTCTAAGAAAACCACCCTGCTAGATCAACGCCATGCGCGTATAATAAAAAATCGAGAATCCGCGGTTCGGTCCAGAGCTAGAAAACAGGCTTATAGAAAAGGCTTGGAAGTTGAAATTGCCCGTTTAACGGAAGAGAATTCCAGACTAAAAAGACAATTGAAAGAGTTGCAGTGCTGCTTGTCCTCCTCTGATAACCCTCCCACTCCCAGAATGGCCGCTCTGTGTAGAACCTCATCATCTCCATTTTGA

Predicted protein sequences of Glyma04g02420

Limit To All Plant Sequences

>Glyma04g02420.1   sequence type=predicted peptide   gene model=Glyma04g02420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASWPPKPTEIFCVHAREKAMASSPCDCWPHLSPPSSIEHVWNDIKLDSLSNSPVDIDFNNNHSVSDSSFLNLTSTSSSVFHKHDHDHSLLSVSNTSFEASGSKKTTLLDQRHARIIKNRESAVRSRARKQAYRKGLEVEIARLTEENSRLKRQLKELQCCLSSSDNPPTPRMAALCRTSSSPF*

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