Glyma04g02405 - SoyBase

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Report for Sequence Feature Glyma04g02405

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1673134
stop:	1678845
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02405

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35890	AT	Annotation by Michelle Graham. TAIR10: winged-helix DNA-binding transcription factor family protein \| chr4:16997433-17000410 FORWARD LENGTH=523	SoyBase	E_val: 7.00E-50	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0048523	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR22792	Panther	LUPUS LA RIBONUCLEOPROTEIN	JGI		ISS
PTHR22792:SF23	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05383	PFAM	La domain	JGI		ISS
UniRef100_G7J5C2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-quinone oxidoreductase chain n=1 Tax=Medicago truncatula RepID=G7J5C2_MEDTR	SoyBase	E_val: 5.00E-118	ISS
UniRef100_I1JT04	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT04_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02405

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g02405 not represented in the dataset	Glyma04g02405 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02405

Paralog	Evidence	Comments
Glyma06g02460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02405 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g021900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02405

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02405

Limit To All Plant Sequences

>Glyma04g02405.1   sequence type=CDS   gene model=Glyma04g02405   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTACCACCACCGTTGATTCTTCCTCTAACCATTACTCACCCACTGCTGCTACTGCTGCCGCTGACACCTCTAATAATTTCCCGCGAAAAAACCTGCCATCCCCGTGGGCCCAGGTAGTTCGCGGTGCTGACGCTGAACCTAACCATCAATCGCCGCCATCTTCTTCCTCTTCCTCGTTCTCGTCCCTCGATTCCATTAATTCTAACGGTCCCGCCGTTCAAACAAGCGATACCACCGTGAAACCTGCGTGGAAGAAACCGGAGTCCAATGGCGTCTCGGAAGTTGGGCCTGTAATGGGCGCTCATTCTTGGCCCGATTTATCTGAGTCCACCAAGCCCACCGCTAAATTGACATCTGACTCCTCTGTTAAGACTGCTGCTGATGAAGAATCACTCACCACCACTCCTCAGGATCCTGTTAATTCAGACTCCCCTCAGAAACAAGCCATTGGTAATGCAAACCCTAGTCCTACTCCTGCAATGAACTATGGTATGGCTAATCGACAAAGATCAATGAAGCAGCGTGGAGGGTCAAATGGCTATAATGTTGGGTCTGGTCCTGTTCAGAACAACTTCTCCGGTGCTACCCAGAATCTTCCTCCACCGCCACCACCGCCCCCCTTTCCTGTGCTTCCGATGCCTCCAAGAACATTTGCCCATGGGATACCAGGGGTTCCAGTTCCTACTCCAAGGGATCCTTACAGGAACAATAACTGGGATGCAAGACCTCCGCATGGGGGTTTTATGCCACCAATGAGTGAGCATCGGAGTCCCTCTCGCAGGGGCAATGCTGGGCACCATCCACGTGGAGACGGTCCCTATCATAACAGTTATGGCAGCAGGCGTGATCAGGATCGTGGAGGTTATGCAAATACTAGAGATGCTCATGTAAATCAACAGAGGATGCCTCCAAGGGGATTAATGAGGCCCCCGCCACCTAATCCTGCTCCATTTATGGGGCCTCAGCCTATGCGACCTTTTGCAAACCCTGCTGGGTTTCCTGAATTCTATTATTTCCCAACGCTACAATTTGAACCCTTTGGGGGCATGCCATTTTTCACACATGCACCTCCTCCTGCAATGTTCTTCCCAGTTGCAGAAACTCCTCTCACCAATACAATAGCCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTGAAGGATGAGTATTTAAGGTCCAACATGGATGAACAGGGATGGGTTCCTATTACTCTGATTGCAAGCTTCCCAAGGGTTAGAAGTTTGACAAGCAACATTAAGTTGATATTGGATTCATTGAGAACTTCCACTGTCGTGGAAGTGCAGGGGGACAAGTTAAGGAGGTGCAATGAGTGGATGAAGTGGCTTCCCTCCGCCCAGCTTCGGGCCAACTCTGGTTCAATATCCCCTAGCGGATCAAGTTCTAATAACCTAGCAGCTGATTTTGAAAAGATCACAGTGGATGAAGCTATTTCACATAAAGTTAACACTGAGCCTACCACAAATGAAGATGCTGCAGGAGAGTCCTCAACTCAGTCCCAAGTCCCAAATGATGCTACTGTGAGCAGCAATTAA

Predicted protein sequences of Glyma04g02405

Limit To All Plant Sequences

>Glyma04g02405.1   sequence type=predicted peptide   gene model=Glyma04g02405   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTTTVDSSSNHYSPTAATAAADTSNNFPRKNLPSPWAQVVRGADAEPNHQSPPSSSSSSFSSLDSINSNGPAVQTSDTTVKPAWKKPESNGVSEVGPVMGAHSWPDLSESTKPTAKLTSDSSVKTAADEESLTTTPQDPVNSDSPQKQAIGNANPSPTPAMNYGMANRQRSMKQRGGSNGYNVGSGPVQNNFSGATQNLPPPPPPPPFPVLPMPPRTFAHGIPGVPVPTPRDPYRNNNWDARPPHGGFMPPMSEHRSPSRRGNAGHHPRGDGPYHNSYGSRRDQDRGGYANTRDAHVNQQRMPPRGLMRPPPPNPAPFMGPQPMRPFANPAGFPEFYYFPTLQFEPFGGMPFFTHAPPPAMFFPVAETPLTNTIANQIDYYFSDANLVKDEYLRSNMDEQGWVPITLIASFPRVRSLTSNIKLILDSLRTSTVVEVQGDKLRRCNEWMKWLPSAQLRANSGSISPSGSSSNNLAADFEKITVDEAISHKVNTEPTTNEDAAGESSTQSQVPNDATVSSN*

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