Report for Sequence Feature Glyma04g02400
Feature Type: gene_model
Chromosome: Gm04
Start: 1666320
stop: 1668031
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g02400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G20180 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF677) | chr1:6996354-6997779 FORWARD LENGTH=390
SoyBase E_val: 4.00E-66 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF05055 PFAM
Protein of unknown function (DUF677)
JGI ISS
UniRef100_A2XCJ1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: UPF0496 protein 3 n=1 Tax=Oryza sativa Indica Group RepID=U496C_ORYSI
SoyBase E_val: 7.00E-20 ISS
UniRef100_I1JT03 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JT03_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g02400
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma04g02400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g021800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g02400
Coding sequences of Glyma04g02400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g02400.1 sequence type=CDS gene model=Glyma04g02400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACAAACCCTAGGTGGCTATCTCTCTTGCAAAGAAGAACGGGTAGATCCAGAAAGAAAGAACACGAAGAAGGTAGCTTTTGCGGCACGCCAAACGTGAATGGAGAATACCTCGAGGCATTCAGAACAAAGTCTTACGTTGAAATATGCAACATAGCACACAGGGAACTGGGAAATGCAAGCACTAATACTAATTCCTTTAAGATGCACCTTACCGAATATCTTCTAGAACCACCCCAGCAAGAAATTGTAGCAAACATGAAGGTGCACCGTCTTCTGGTGGACTACTTCGAAGCCAGCTTAGAAGCATGCCGTTGTTGCGAGACAATCGTTCAAGCTATCCATCAAACAAGACTTGCTTACGCAAGAGTCACCAATGTCGTTGTCAAGCTAAGCCAAACAGCGCCTTATTATGACCAATCCCAAAACCCTATCCACACACAACTTTCTTCCTTCGTATTATTACAAAATAACCCTTTGTCTATTGTGCAGTTCCATGACATTCACGACAGATACATGACCCTCTTAAGTAGGCTGTTATCAAAGAAAAGGAAAATTCAAAGAATATTAACCATAAAGAGCGTTTGCAAGAAGGTTGGAGGAATCGGTTTAATCGTTTCGCAAGGCGTTCTTATGGTGGCTTTATTGGTATTTGCGTTTCATAGTGTAATTGGGTTTGTGGCTGCTGCACCGTGCATAGTTGGTTTGGTCATGAAGAAGAGATTTAAGAGGAGTTGTGAAAGGTTCAACACTAGAAACTCTTGTATGAAATTGTGTGAGCAACTTGATGTTGCTGCCAAAGGGGTTTATGTGGTGATCAATGAGTTGGACACTATGAGCCGAATGGTTAAGAGGTTAGATGATGAGGTTGAACATTGGAGACAGGTTGCTGATATTTGTGTGAAGAATTACTGTAAGTGTGAAATATTGAAGCGGGTTGTGAAGGAATTTCAGGACAACGAATCTAACTTTTTGGATATGTTGGAAGAACTTGAAGAGCATATCTATTTGTGCTTTCTCACCGTAAACAGATTTAGAAGATTGGTTATGGAAGAAATTATGGGGAAACAACGTTAA
Predicted protein sequences of Glyma04g02400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g02400.1 sequence type=predicted peptide gene model=Glyma04g02400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTNPRWLSLLQRRTGRSRKKEHEEGSFCGTPNVNGEYLEAFRTKSYVEICNIAHRELGNASTNTNSFKMHLTEYLLEPPQQEIVANMKVHRLLVDYFEASLEACRCCETIVQAIHQTRLAYARVTNVVVKLSQTAPYYDQSQNPIHTQLSSFVLLQNNPLSIVQFHDIHDRYMTLLSRLLSKKRKIQRILTIKSVCKKVGGIGLIVSQGVLMVALLVFAFHSVIGFVAAAPCIVGLVMKKRFKRSCERFNTRNSCMKLCEQLDVAAKGVYVVINELDTMSRMVKRLDDEVEHWRQVADICVKNYCKCEILKRVVKEFQDNESNFLDMLEELEEHIYLCFLTVNRFRRLVMEEIMGKQR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
