Glyma04g02390 - SoyBase

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Report for Sequence Feature Glyma04g02390

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1661612
stop:	1664611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75980	AT	Annotation by Michelle Graham. TAIR10: Single hybrid motif superfamily protein \| chr1:28522936-28524302 REVERSE LENGTH=225	SoyBase	E_val: 1.00E-95	ISS
GO:0006546	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005960	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: glycine cleavage complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3266	KOG	Predicted glycine cleavage system H protein	JGI		ISS
PTHR13651	Panther	UNCHARACTERIZED	JGI		ISS
PF01597	PFAM	Glycine cleavage H-protein	JGI		ISS
UniRef100_E4MXA2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-21-G24 n=1 Tax=Eutrema halophilum RepID=E4MXA2_THEHA	SoyBase	E_val: 2.00E-92	ISS
UniRef100_I1JT02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JT02_SOYBN	SoyBase	E_val: 3.00E-147	ISS

Expression Patterns of Glyma04g02390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02390

Paralog	Evidence	Comments
Glyma06g02440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g021700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g02390

Limit To All Plant Sequences

>Glyma04g02390.2   sequence type=transcript   gene model=Glyma04g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTCAATCATACGTTGTTGTTGTCACTTCACTTGTAACTTGTAAGGTGGTTCTGTAACCTCTGTTACCACTCACGAGTTACGACTGTTACCCTATTTGTAGAAGGCTGGTTGTCGCGGTTGTTATTTTTCTCATTTAAATTTGAATAAATAAAACATGTCAACAATAAACGAGGACCATATCGTCGACGAATCGAACTGTTCAGAAACCAAACTAGTCGAAGAGGAAGAGGAAGACTTACAGAAGCTTCTAGTCCCTGACTTGCAGAATCTTCCTCTCACTCCTGCTTCCGCCGTTGAAACCAACTTTGCCATTTACTTCGCCCTAGATTTCATGAAGCCAGCTCACGATCAGTACGTTTACCGCCACGCCAATGGCTTGTGTGTGATTGGGTTGGCTCCTTCCCACATTGCTTTCAATGATGAAGGTGGAATCACAGCCGTTGATTTCAATGTTGGAAAGTCTGATCGCAGCGGGATAAAAGTCACTGGAAAGCGGAAGAAGAACGCACAACACTTTGAGTCCAATACGGCTCTGTGTAAAATTTCTACCAAAAATGATACTTATATTGTGAGGCTGGCAGAGAAGGATACATTGCTATTATCATGCCAAAACCTGCTGATTGGCTCAAGGTCAAGGCTTCCCTTGTTAGCCTTCAGGAGTACAAGAAATCGAGGGAAGTCAATTGAATCTGGAACAAGAATGGTGCCATAATCAAAGTGCTAACCCCACATGATGCTTCATTTAGAGAGGTCCCAAATGCTACAAACTGGATCAAATTGATAAATTTTTAGGTGCAGTAGATGATGAGACACCTTACACCGTGGCCGGATGATTAGTTAAATCTCTTAACTCCCCATGGGCAACCAAGAATCTCATGATATTGGATCCACTTCATTCTTTAGGTTTTTCTCTTTTATTTTTTGCTTTGTTATTTTATTTCTTCTTTTTAACTATTTAAATTAATAAAAAATAATGATGATGATGATGATATGACTTTTGGCCACTTTTAAGATAATTACTGGCCAGAGGTGAGTGTTACAAATGTTTTTTTTTTAATAGAAGTGTGTTATTATAGTTTTATTAGAAATAAAT

Coding sequences of Glyma04g02390

Limit To All Plant Sequences

>Glyma04g02390.1   sequence type=CDS   gene model=Glyma04g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACAATAAACGAGGACCATATCGTCGACGAATCGAACTGTTCAGAAACCAAACTAGTCGAAGAGGAAGAGGAAGACTTACAGAAGCTTCTAGTCCCTGACTTGCAGAATCTTCCTCTCACTCCTGCTTCCGCCGTTGAAACCAACTTTGCCATTTACTTCGCCCTAGATTTCATGAAGCCAGCTCACGATCAGTACGTTTACCGCCACGCCAATGGCTTGTGTGTGATTGGGTTGGCTCCTTCCCACATTGCTTTCAATGATGAAGGTGGAATCACAGCCGTTGATTTCAATGTTGGAAAGTCTGATCGCAGCGGGATAAAAGTCACTGGAAAGCGGAAGAAGAACGCACAACACTTTGAGTCCAATACGGCTCTGTGTAAAATTTCTACCAAAAATGATACTTATATTGTGAGATGTTGCGTCAAAGGCTCCCTTTTAGAAATCAATCAACAACTAATCAAGCAGCCAGAACTGCTTAATGTTTCGGCTGGCAGAGAAGGATACATTGCTATTATCATGCCAAAACCTGCTGATTGGCTCAAGGTCAAGGCTTCCCTTGTTAGCCTTCAGGAGTACAAGAAATCGAGGGAAGTCAATTGA

>Glyma04g02390.2   sequence type=CDS   gene model=Glyma04g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACAATAAACGAGGACCATATCGTCGACGAATCGAACTGTTCAGAAACCAAACTAGTCGAAGAGGAAGAGGAAGACTTACAGAAGCTTCTAGTCCCTGACTTGCAGAATCTTCCTCTCACTCCTGCTTCCGCCGTTGAAACCAACTTTGCCATTTACTTCGCCCTAGATTTCATGAAGCCAGCTCACGATCAGTACGTTTACCGCCACGCCAATGGCTTGTGTGTGATTGGGTTGGCTCCTTCCCACATTGCTTTCAATGATGAAGGTGGAATCACAGCCGTTGATTTCAATGTTGGAAAGTCTGATCGCAGCGGGATAAAAGTCACTGGAAAGCGGAAGAAGAACGCACAACACTTTGAGTCCAATACGGCTCTGTGTAAAATTTCTACCAAAAATGATACTTATATTGTGAGGCTGGCAGAGAAGGATACATTGCTATTATCATGCCAAAACCTGCTGATTGGCTCAAGGTCAAGGCTTCCCTTGTTAGCCTTCAGGAGTACAAGAAATCGAGGGAAGTCAATTGAATCTGGAACAAGAATGGTGCCATAA

Predicted protein sequences of Glyma04g02390

Limit To All Plant Sequences

>Glyma04g02390.1   sequence type=predicted peptide   gene model=Glyma04g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTINEDHIVDESNCSETKLVEEEEEDLQKLLVPDLQNLPLTPASAVETNFAIYFALDFMKPAHDQYVYRHANGLCVIGLAPSHIAFNDEGGITAVDFNVGKSDRSGIKVTGKRKKNAQHFESNTALCKISTKNDTYIVRCCVKGSLLEINQQLIKQPELLNVSAGREGYIAIIMPKPADWLKVKASLVSLQEYKKSREVN*

>Glyma04g02390.2   sequence type=predicted peptide   gene model=Glyma04g02390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTINEDHIVDESNCSETKLVEEEEEDLQKLLVPDLQNLPLTPASAVETNFAIYFALDFMKPAHDQYVYRHANGLCVIGLAPSHIAFNDEGGITAVDFNVGKSDRSGIKVTGKRKKNAQHFESNTALCKISTKNDTYIVRLAEKDTLLLSCQNLLIGSRSRLPLLAFRSTRNRGKSIESGTRMVP*

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