Glyma04g02380 - SoyBase

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Report for Sequence Feature Glyma04g02380

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1656084
stop:	1658234
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20190	AT	Annotation by Michelle Graham. TAIR10: expansin 11 \| chr1:6998762-6999710 REVERSE LENGTH=252	SoyBase	E_val: 6.00E-146	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0009831	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification involved in multidimensional cell growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_B9R8E5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-expansin 11, putative n=1 Tax=Ricinus communis RepID=B9R8E5_RICCO	SoyBase	E_val: 1.00E-161	ISS
UniRef100_C6T9D4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T9D4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02380

Paralog	Evidence	Comments
Glyma06g02420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g021600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g02380

Limit To All Plant Sequences

>Glyma04g02380.2   sequence type=transcript   gene model=Glyma04g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCACATGTGGCATCGTTGCCTTAGCGACTCTGATCCCTTATTTAAACACTAACTCCGTGCTTAATACAAATTCTCTCATCACATCCTTTCTTTTTCACTCGGGGCCATTGACTTGAGCATATTCAGTGCGTCGTAAAGCAAAAAGATACTAATGGCTAAAGTCATGTTTGGTTTGGTCTGCAGCTTCCTCGTATTATGCTGTTTCACAATCAACACTAGCGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGAGGAGGAGCTTGTGGGTATGGGAATCTGTATTCGACAGGGTACGGAACTGATACAGCGGCATTAAGTACTGCCATATTTAACGATGGAGCTTCATGTGGGGAGTGTTACAAAATCATATGCGATTATCAAACAGATCCCAGATGGTGCTTGAAAGGAGCATCAGTAACCATAACTGCCACAAACTTCTGCCCTCCCAATTTTGCTCTTCCCAACAACAACGGAGGATGGTGCAACCCACCTCTCAAACATTTCGACATGGCTCAACCCGCATGGGAAAAGATTGGTATCTATCGAGGAGGGATCGTGCCAGTGTTGTTCCAAAGGGTTCCATGCGTGAAGAAGGGAGGGATTAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTATTGATCAGCAACGTGGGAGGGGCTGGATCTATTCAATCTGTGTCTATCAAAGGCTCAAAAACTGGATGGATGACTATGTCAAGAAACTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACCACCGATGGTGTAACTAGGTTTTTCCAAGACGTTGTTCCATCAAATTGGGCTTTTGGCCAGACTTTCCCTACTAGTGTCCAGTTTTAAGGGCCCAAAACAACTATTGAGTTGTGGGTTTTGGACTTTCTCATGGACGAAACGGCAGTGGCGTGCTTATTATTTTACTGGGAGCAGCCCGCCACCTATCTACTCTGCTTTTGAATTGGGTAAATATAGTGAGACCGAACCCATGAACTTGATGTCCTTAATGAAGGAGCCCAAAGTGGCATTGCATTTACGTGAATTATTATTTTATAAGGAATTATATGTCAGCTGTAAGCCACGTAAAAGTAAACATATTCAGAGTTTGAATCATACCATACTATAAAATGTTGTTATGCGAACACTTTTGTTGAGTTTTTAGTACAGCTGTATTGCGGGAATTGGGACCACACTAATTCCCTGAAATCGTTGTTTCTGCATACCAGACTATTAGGTCGTCAGTTGCATCACACACTTAAAAAAGCACAATAGTTTTTTATTTGAATTTTCTCTTGAAAACGAGATTGCTTTATTATTTAAGTAAAAA

Coding sequences of Glyma04g02380

Limit To All Plant Sequences

>Glyma04g02380.1   sequence type=CDS   gene model=Glyma04g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAAGTCATGTTTGGTTTGGTCTGCAGCTTCCTCGTATTATGCTGTTTCACAATCAACACTAGCGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGAGGTAGCGATGCCTCGGGGACCATGGGAGGAGCTTGTGGGTATGGGAATCTGTATTCGACAGGGTACGGAACTGATACAGCGGCATTAAGTACTGCCATATTTAACGATGGAGCTTCATGTGGGGAGTGTTACAAAATCATATGCGATTATCAAACAGATCCCAGATGGTGCTTGAAAGGAGCATCAGTAACCATAACTGCCACAAACTTCTGCCCTCCCAATTTTGCTCTTCCCAACAACAACGGAGGATGGTGCAACCCACCTCTCAAACATTTCGACATGGCTCAACCCGCATGGGAAAAGATTGGTATCTATCGAGGAGGGATCGTGCCAGTGTTGTTCCAAAGGGTTCCATGCGTGAAGAAGGGAGGGATTAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTATTGATCAGCAACGTGGGAGGGGCTGGATCTATTCAATCTGTGTCTATCAAAGGCTCAAAAACTGGATGGATGACTATGTCAAGAAACTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACCACCGATGGTGTAACTAGGTTTTTCCAAGACGTTGTTCCATCAAATTGGGCTTTTGGCCAGACTTTCCCTACTAGTGTCCAGTTTTAA

>Glyma04g02380.2   sequence type=CDS   gene model=Glyma04g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAAGTCATGTTTGGTTTGGTCTGCAGCTTCCTCGTATTATGCTGTTTCACAATCAACACTAGCGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGAGGAGGAGCTTGTGGGTATGGGAATCTGTATTCGACAGGGTACGGAACTGATACAGCGGCATTAAGTACTGCCATATTTAACGATGGAGCTTCATGTGGGGAGTGTTACAAAATCATATGCGATTATCAAACAGATCCCAGATGGTGCTTGAAAGGAGCATCAGTAACCATAACTGCCACAAACTTCTGCCCTCCCAATTTTGCTCTTCCCAACAACAACGGAGGATGGTGCAACCCACCTCTCAAACATTTCGACATGGCTCAACCCGCATGGGAAAAGATTGGTATCTATCGAGGAGGGATCGTGCCAGTGTTGTTCCAAAGGGTTCCATGCGTGAAGAAGGGAGGGATTAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTATTGATCAGCAACGTGGGAGGGGCTGGATCTATTCAATCTGTGTCTATCAAAGGCTCAAAAACTGGATGGATGACTATGTCAAGAAACTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACCACCGATGGTGTAACTAGGTTTTTCCAAGACGTTGTTCCATCAAATTGGGCTTTTGGCCAGACTTTCCCTACTAGTGTCCAGTTTTAA

Predicted protein sequences of Glyma04g02380

Limit To All Plant Sequences

>Glyma04g02380.1   sequence type=predicted peptide   gene model=Glyma04g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKVMFGLVCSFLVLCCFTINTSAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTAIFNDGASCGECYKIICDYQTDPRWCLKGASVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCVKKGGIRFSVNGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGVTRFFQDVVPSNWAFGQTFPTSVQF*

>Glyma04g02380.2   sequence type=predicted peptide   gene model=Glyma04g02380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKVMFGLVCSFLVLCCFTINTSAFSPSGWTNAHATFYGGGACGYGNLYSTGYGTDTAALSTAIFNDGASCGECYKIICDYQTDPRWCLKGASVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCVKKGGIRFSVNGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGVTRFFQDVVPSNWAFGQTFPTSVQF*

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