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Report for Sequence Feature Glyma04g02340

Feature Type:gene_model
Chromosome:Gm04
Start:1623261
stop:1624875
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g02340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42200AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:16860523-16861014 FORWARD LENGTH=163 SoyBaseE_val: 8.00E-47ISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9R8E9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9R8E9_RICCO SoyBaseE_val: 1.00E-60ISS
UniRef100_I1JSZ6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSZ6_SOYBN SoyBaseE_val: 6.00E-91ISS

Expression Patterns of Glyma04g02340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02340
ParalogEvidenceComments
Glyma06g02390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g021200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g02340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g02340
>Glyma04g02340.1   sequence type=CDS   gene model=Glyma04g02340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCGATTCGGTCCTTCTGGCGCTTTTCTTGCCGTGCCTTGGCATGAGCGGGGTTTTTATCGTCTACATGTGCCTTCTTTGGTACGCCACCACCCGGCACCACCAGCAACCCCCCATCGACGGGCAACCGGTGAAGCCCGTCGCTGACAAGGGTCTATCCGCTCTGGAGTTGGAGAAGCTTCCAAGAGTCACCGGCAAAGAACTCGTCTTGGGCAACGAATGCGCCGTCTGCCTCGACGAGATCGAGAGCGAGCAACCGGCTAGACTGGTCCCCGGTTGCAACCATGGTTTTCATGTCCATTGCGCTGACACCTGGCTCTCCAAGCACCCTCTTTGCCCCGTTTGCAGGACCAAGCTGGACCCTCAAATCTTCACTTCCCAAAGCCCTTGCTGA
Predicted protein sequences of Glyma04g02340
>Glyma04g02340.1   sequence type=predicted peptide   gene model=Glyma04g02340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDSVLLALFLPCLGMSGVFIVYMCLLWYATTRHHQQPPIDGQPVKPVADKGLSALELEKLPRVTGKELVLGNECAVCLDEIESEQPARLVPGCNHGFHVHCADTWLSKHPLCPVCRTKLDPQIFTSQSPC*






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