Glyma04g02300 - SoyBase

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Report for Sequence Feature Glyma04g02300

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1588821
stop:	1593552
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20270	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr1:7021383-7022923 REVERSE LENGTH=287	SoyBase	E_val: 4.00E-167	ISS
GO:0018401	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
GO:0031418	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-ascorbic acid binding	SoyBase	N/A	ISS
KOG1591	KOG	Prolyl 4-hydroxylase alpha subunit	JGI		ISS
PTHR10869	Panther	PROLYL 4-HYDROXYLASE ALPHA SUBUNIT	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_G7J5W0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prolyl 4-hydroxylase alpha-2 subunit n=2 Tax=Medicago truncatula RepID=G7J5W0_MEDTR	SoyBase	E_val: 2.00E-171	ISS
UniRef100_I1JSZ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSZ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02300

Paralog	Evidence	Comments
Glyma06g02360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g020800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02300

Limit To All Plant Sequences

>Glyma04g02300.1   sequence type=CDS   gene model=Glyma04g02300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAGGAAAGCATTCGCATACCCGCGCACAAGGGAAGAAGTGGTCAACGTTCTCGCTGGTTCTGTGGGCGCTTTTCTTCCTCACACTCATCCTCGTCGTGCTCCTTGCTCTCGGCATTGTTTATCTTCCAACCACCGACGACGATTTTCCAACCACGGAGCTCAGCGCCTTCAGGCGCAAGACCTCTCAAAGTGGCGAGAGTTTGGTGGAAAACTCGGAGCAGTGGACCGAGATTCTCTCCTGGGAGCCAAGAGCGTTCATCTATCACAATTTTCTGTCTAAAGAAGAATGTGAGTACTTGATTGAACTTGCCAAACCTCATATGGTAAAATCAAGTGTTGTTGATAGCAAGACTGGGAAGAGTACAGAAAGCAGGGTTCGAACCAGTTCAGGAATGTTCTTGAAGAGAGGAAGGGACAAAATCATCCAGAATATAGAGAAAAGAATTGCTGACTTTACCTTCATACCTGTAGAGAATGGAGAAGGACTTCAAATCCTTCACTATGAAGCAGGACAAAAATATGAGCCTCACTATGATTACTTCCTTGATGAGTTCAACACTAAGAATGGAGGCCAACGTATTGCTACAGTTCTTATGTACCTTTCAGATGTTGAAGAAGGCGGTGAGACTGTATTTCCTGCTGCCAATGCAAATTTTAGTTCTGTGCCTTGGTGGAATGATTTATCCCAATGTGCAAGAAAGGGTCTCTCAGTGAAACCAAAAATGGGTGATGCTCTGCTATTTTGGAGCATGAGGCCTGATGCCACTCTAGATCCATCTAGTTTACATGGCGGTTGCCCAGTAATTAAAGGAAATAAATGGTCTTCAACAAAGTGGCTGCATCTTCATGAGTACAAGGTTTGA

Predicted protein sequences of Glyma04g02300

Limit To All Plant Sequences

>Glyma04g02300.1   sequence type=predicted peptide   gene model=Glyma04g02300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGKHSHTRAQGKKWSTFSLVLWALFFLTLILVVLLALGIVYLPTTDDDFPTTELSAFRRKTSQSGESLVENSEQWTEILSWEPRAFIYHNFLSKEECEYLIELAKPHMVKSSVVDSKTGKSTESRVRTSSGMFLKRGRDKIIQNIEKRIADFTFIPVENGEGLQILHYEAGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVEEGGETVFPAANANFSSVPWWNDLSQCARKGLSVKPKMGDALLFWSMRPDATLDPSSLHGGCPVIKGNKWSSTKWLHLHEYKV*

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