Glyma04g02280 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g02280

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1582345
stop:	1584513
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76070	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCB	SoyBase	E_val: 3.00E-31	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q8S901	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syringolide-induced protein 14-1-1 n=1 Tax=Glycine max RepID=Q8S901_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8S901	UniRef	Annotation by Michelle Graham. Best UniRef hit: Syringolide-induced protein 14-1-1 n=1 Tax=Glycine max RepID=Q8S901_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02280

Paralog	Evidence	Comments
Glyma06g02340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g020700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02280

Limit To All Plant Sequences

>Glyma04g02280.1   sequence type=CDS   gene model=Glyma04g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTTACATACAAAGATGAAGAGCAAAATCTTGAAGGCACTACCAAAAGCAGTTGCAGCAGTCACCGTGACATTTCAAAACCATCCATTCAGCCCAGGCAGGGATCACAAATCAAAGCCTATCGTATCTATGATTCCCCATGAAGCTAGAAGAAAAACCCACGATAGAGGCAATAACGGCATTGATGAAATTTATTCCCAAGAACCCACTTCACCAAAAATCTCCTGCATGGGACAGATCAAGCACAAGAAGAAACAAATCAAAAAATCAAAGTCAAAGAGCAAGTCCATGACAAAAGAAGCGAGGAACGTTGCTAGCAAAAAAACATCCTCAGCTTCCAGAGACATAGAGGTAAAAAAGCACGTTTCCACGTTTCACAAGATGTTATTATTCCATGGGGCAAAGCCAAAATCTGAGGGAAGGAAATCCAACGCTTCTGCGCCTGGAGATATTAACAAGGATCTTGCTCTTGCGGACGCAGCACGCGCACCGCGCGTGAGTCAGATGAGAAGGTTTTCTAGTGGACGTGACGCTCTTGCTGAATTTGATTGGAAGGTGTCGCCAGATGAAGAGGAAATTGATTACTATTCGGATGAATACAGAGTGGATAGTGATGGCGAAGAAGAGGAAGAGATTATTATCCCTTTCTCTGCACCCCTTTTGGTTGGTGGTGGAGTTGGTCATACTCGTGGGGGTGTGCTTAATTTGAAGCCACGAAAAGAAATTAACCTGTGGAAGAGAAGAACCATGGCTCCACCCAGGCCTCTTCAATTGGACAGAGCAAACTGA

Predicted protein sequences of Glyma04g02280

Limit To All Plant Sequences

>Glyma04g02280.1   sequence type=predicted peptide   gene model=Glyma04g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLHTKMKSKILKALPKAVAAVTVTFQNHPFSPGRDHKSKPIVSMIPHEARRKTHDRGNNGIDEIYSQEPTSPKISCMGQIKHKKKQIKKSKSKSKSMTKEARNVASKKTSSASRDIEVKKHVSTFHKMLLFHGAKPKSEGRKSNASAPGDINKDLALADAARAPRVSQMRRFSSGRDALAEFDWKVSPDEEEIDYYSDEYRVDSDGEEEEEIIIPFSAPLLVGGGVGHTRGGVLNLKPRKEINLWKRRTMAPPRPLQLDRAN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain