Glyma04g02260 - SoyBase

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Report for Sequence Feature Glyma04g02260

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1564678
stop:	1573792
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16990	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr2:7383194-7387783 FORWARD LENGTH=456	SoyBase	E_val: 4.00E-135	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008493	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tetracycline transporter activity	SoyBase	N/A	ISS
KOG2816	KOG	Predicted transporter ADD1 (major facilitator superfamily)	JGI		ISS
PTHR24003	Panther	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR	JGI		ISS
PTHR24003:SF15	Panther		JGI		ISS
PF07690	PFAM	Major Facilitator Superfamily	JGI		ISS
UniRef100_G7J5X3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hippocampus abundant transcript-like protein n=1 Tax=Medicago truncatula RepID=G7J5X3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339AD7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339AD7 related cluster n=1 Tax=unknown RepID=UPI0002339AD7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02260

Paralog	Evidence	Comments
Glyma06g02320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g020500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02260

Limit To All Plant Sequences

>Glyma04g02260.1   sequence type=CDS   gene model=Glyma04g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAATTGTATGGGTTGAGTCATCTCTTCATGACAGTGTTTCTTCATAACTTCTCCATGTTCATGGTGGTACCAGCCATCACCGATGTCACAATGGCTGCTCTTTGTCCCGGACAAGATGAATGCTCACTTGCCATCTACATCACTGGTTTTCAACAAGCGATGATAGGGCTGGGCACGCTTGTGATGATGCCACTATTGGGAAATCTTTCGGATAAGTATGGGAGGAAGGCCATCCTCACACTCCCTATGATCCTCACAATCATTCCCGTAGGCATATTAGCTTACAGCAGGACGAAAAAATTCTTCTACGTCTACTATGTGTTTAAGATACTCATTTCAATGGTTTGCGAAGGAAGCGTTCCTTGCCTCGCCCTAGCTTACGTGGCAGATAACGTTCCAGAAAGTGGACGAAGCACTGTATTTGGAATTCTTTCAGGAATTGGGTCTGCCGCATTTGTGTGTGCCACCTTATCTGCTCGATTTTTATCATCAGCCCTAACTTTTCAAGTTTCTACACTTATCGCGGTGATTGGAGCACTATACATGCAATTTTTCCTTCGAGATTCAGTCATTGATGACAAGCACCTTTATACCCCAATCATATCACAAGGAAATCCCATAATATCTAAGGTCAATGGAAACTTGGAAAGTAAGAAGCATCTTTTGAAAGCATTGCGCTCCATAAAGGACCTAACTTCTTTCCTCAATAGCAGCTTGACCATTAATCAAGCAGCAATTGTTGCTTTCTTCAATAGCCTTGCAGATGTTGGCCTTCATGGATCATTGTTGTATTTTTTAAAGGCTCAATTTCACTTTGATAAGAATCAGTTTGCTGACTTGATGGTCATTTCTGGGATTGCAGGGACTGTGTCACAGCTTCTTCTTATGCCTATTTTGGCTCCTATTTTGGGCGAGACAAGACTACTCTCAGTTGGCCTATTCTTCCATTGTGTACATATGTTCCTTTACAGCATGGCATGGTCCTCCTTGGTTCCTTATGCTTCCGCCATGTTCTCAATTTTATATGTTTTCTCACACCCTTGTATACGAAGTATTGTATCTAAAGAAGCTGGTCCCCATGAGCAGGGAAAGGCTCAAGGTTGCATTTCAGGCATATGTTCAATTGCACATATTGTTTCTCCCTTGGTTTTCTCTCCATTAACAGCTCTATTCCTTTCTGAAAAGGCACCTTTTGATTTTCCTGGATTCAGTATAATGTGCATTGGATTTGCTTCGATGATATCTTTTGTTCAAAGTTTGATGCTTAGAGTGGCTCCTCCCATTTTGAATTAG

Predicted protein sequences of Glyma04g02260

Limit To All Plant Sequences

>Glyma04g02260.1   sequence type=predicted peptide   gene model=Glyma04g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKLYGLSHLFMTVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGTLVMMPLLGNLSDKYGRKAILTLPMILTIIPVGILAYSRTKKFFYVYYVFKILISMVCEGSVPCLALAYVADNVPESGRSTVFGILSGIGSAAFVCATLSARFLSSALTFQVSTLIAVIGALYMQFFLRDSVIDDKHLYTPIISQGNPIISKVNGNLESKKHLLKALRSIKDLTSFLNSSLTINQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMPILAPILGETRLLSVGLFFHCVHMFLYSMAWSSLVPYASAMFSILYVFSHPCIRSIVSKEAGPHEQGKAQGCISGICSIAHIVSPLVFSPLTALFLSEKAPFDFPGFSIMCIGFASMISFVQSLMLRVAPPILN*

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