Glyma04g02250 - SoyBase

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Report for Sequence Feature Glyma04g02250

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1555187
stop:	1562496
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35790	AT	Annotation by Michelle Graham. TAIR10: phospholipase D delta \| chr4:16955774-16959875 REVERSE LENGTH=857	SoyBase	E_val: 0	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009789	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0012501	GO-bp	Annotation by Michelle Graham. GO Biological Process: programmed cell death	SoyBase	N/A	ISS
GO:0046473	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidic acid metabolic process	SoyBase	N/A	ISS
GO:0090333	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal closure	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0015630	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule cytoskeleton	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004630	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase D activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG1329	KOG	Phospholipase D1	JGI		ISS
PTHR18896	Panther	PHOSPHOLIPASE D	JGI		ISS
PTHR18896:SF13	Panther	PHOSPHOLIPASE D DELTA	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF00614	PFAM	Phospholipase D Active site motif	JGI		ISS
PF12357	PFAM	Phospholipase D C terminal	JGI		ISS
UniRef100_I1JSY8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase D n=1 Tax=Glycine max RepID=I1JSY8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233997F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233997F related cluster n=1 Tax=unknown RepID=UPI000233997F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02250

Paralog	Evidence	Comments
Glyma06g02310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g020400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02250

Limit To All Plant Sequences

>Glyma04g02250.1   sequence type=CDS   gene model=Glyma04g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCACAATCCGCACACCGTGGTCTACCTCCACGGCACCCTCGATTTGGTAATCGAGGAGGCTCGCTTCCTTCCGAACATGGACATGCTCTCCGAGCGCGTGCGGAGGTTCTTCTCCGCTCTCAACACCTGCAGCGCCTCCATCTCCGGGAAACGGAAGCAGCAACAAGCGCGCCACCGCCACCGCAAAATCATCACCAGCGATCCTTACGTCACCGTGTGCCTCGCCGGGGCCACCGTGGCGCGCACCCGCGTGATCTCGAACTCGCAGGACCCGACGTGGAACGAGCACTTCAAGATCCCGCTCGCGCACCCGGCCTCGCAGGTCGAGTTCTACGTCAAGGACAACGACATGTTCGGCGCCGACCTGATTGGAGTCGCCACCGTCTCCGCCGAGAGGATCCTCTCCGGCGAAGCCATCAGCGACTGGTTCCCGATCATAGGCACGTTCGGGAAGCCGCCGAAGCCTGACTGCGCGGTGCGGCTGGCGATGAAATTCACGAGGTGCGAGGACAGTCCTATGTACCGGGCCGGCACCGAATCGGATCCGGACCGGTTCGTTGTTCGGGAATCGTATTTTCCGGTTCGGCGCGGAGGTTCGGTGACGCTGTATCAGGACGCGCACGTGCCTGATTCGATGTTGCCGGAGGTTGAGTTAGAGGACGGGGTTGTGTTTGAGCACGGGAAGTGCTGGGAAGATATATGCCACGCGATATTGGAAGCGCATCATTTGGTTTACATTGTGGGTTGGTCCATCTACCACAAGGTGAAGTTGGTGAGAGAGCCTACAAAACCCTTACCTAGCGGTGGTAACTTGAGTCTCGGGGAGTTGCTCAAGTACAAGTCGCAAGAAGGTTTGCGAGTTTTACTATTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTTTCATTAACACGAGTGGAGTAATGCAAACACATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTAGATGTTTGCTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAGGCAGCAGGTTGTTGGCACTCTCTTTACACATCATCAGAAATGTGTGATTGTGGATACTCAAGCACACGGCAATAATCGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCCGAGCATAGAATTTTACGTGATATCGACACTGTTTATCAGGACGATTATCATAATCCCACATTTTGTGCGGGAACCAAGGGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAAGGCCCAGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCCACCAGATGGTCTGAGCTGGGTCGAAAACTCAAGAGAGTATCTCACTGGAACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCGGAATCAACTCCAATTGATGATCCTGAACTATGGGTTTCAAAGGAAGACGATCCTGAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGTTCTTTGAAGGGATTTCCTAAGGATGTAGTAGTTGCCGAGACTCAGAACCTTGTTTGTGCAAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCATATATACATGCGATCAGATCTGCTCAACATTTTATTTATATCGAGAATCAATATTTTATTGGATCATCCTTTGCTTGGCCAGCTTACAAAGAAGCAGGTGCTGATAACCTAATTCCTGTGGAGTTGGCACTGAAGATAGTCAGTAAGATAAGATCCAAGGAGAGATTTGCAGTTTATATTGTCATCCCAATGTGGCCTGAAGGTTCCCCTTCTTCTACTTCAGTGCAAGAGATACTCTTTTGGCAGGGACAAACAATGAAAATGATGTATGAAATCATTGCTCGGGAGTTAAAATCTATGCAGCTTGATAGTCATCCACAAGATTACCTCAATTTTTACTGTCTTGGGAACCGAGAGCAGTTGACAACTGAAGTTTCGAGTTCAAGTAGTTCACCTTCAGATAATGGCGAAACGGTTTCAGCCTCACAAAAGTTCCGACGGTTTATGATTTATGTACATGCCAAAGGAATGATTGTGGATGATGAATATGTAATTCTTGGGTCTGCCAATATAAATCAACGATCTTTGGCTGGATCCAGAGATACTGAGATAGCAATGGGTGCATATCAACCCCATCATACATGGAGTCAAAAAAAGGGACATCCACATGGTCAGGTATATGGGTATAGAATGTCTTTGTGGGCAGAACACACGGGGACCATAGAAGCTTGCTTCAAGGAGCCTGAATGTTTGGAGTGTGTGAAAAGTGTGAACAAGATTGCTGAAGACAACTGGAAGAAGTACACAGCTGATGATTATAGTCCATTGCAAGGGCACCTAATGAAGTATCCTGTGTCTGTAAATGCCAATGGGAAGGTAAAGTCCTTACCTGGATTTGAGTCTTTCCCAGATGTCGGTGGCAAGGTGCTTGGCTCCCGGTCTACCCTTCCTGATGCTCTAACTACGTAA

Predicted protein sequences of Glyma04g02250

Limit To All Plant Sequences

>Glyma04g02250.1   sequence type=predicted peptide   gene model=Glyma04g02250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPHNPHTVVYLHGTLDLVIEEARFLPNMDMLSERVRRFFSALNTCSASISGKRKQQQARHRHRKIITSDPYVTVCLAGATVARTRVISNSQDPTWNEHFKIPLAHPASQVEFYVKDNDMFGADLIGVATVSAERILSGEAISDWFPIIGTFGKPPKPDCAVRLAMKFTRCEDSPMYRAGTESDPDRFVVRESYFPVRRGGSVTLYQDAHVPDSMLPEVELEDGVVFEHGKCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPTKPLPSGGNLSLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTSGVMQTHDEETRKFFKHSSVRCLLSPRYASSKLSIFRQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRILRDIDTVYQDDYHNPTFCAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATRWSELGRKLKRVSHWNDDSLIKLERISWILSPSESTPIDDPELWVSKEDDPENWHVQVFRSIDSGSLKGFPKDVVVAETQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPAYKEAGADNLIPVELALKIVSKIRSKERFAVYIVIPMWPEGSPSSTSVQEILFWQGQTMKMMYEIIARELKSMQLDSHPQDYLNFYCLGNREQLTTEVSSSSSSPSDNGETVSASQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSLAGSRDTEIAMGAYQPHHTWSQKKGHPHGQVYGYRMSLWAEHTGTIEACFKEPECLECVKSVNKIAEDNWKKYTADDYSPLQGHLMKYPVSVNANGKVKSLPGFESFPDVGGKVLGSRSTLPDALTT*

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