Glyma04g02200 - SoyBase

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Report for Sequence Feature Glyma04g02200

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1517518
stop:	1518699
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G17030	AT	Annotation by Michelle Graham. TAIR10: F-box family protein with a domain of unknown function (DUF295) \| chr2:7399108-7400650 FORWARD LENGTH=407	SoyBase	E_val: 2.00E-32	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF03478	PFAM	Protein of unknown function (DUF295)	JGI		ISS
UniRef100_B9R8H5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9R8H5_RICCO	SoyBase	E_val: 4.00E-138	ISS
UniRef100_UPI000233A81B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A81B related cluster n=1 Tax=unknown RepID=UPI000233A81B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02200

Paralog	Evidence	Comments
Glyma06g02276	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g019900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02200

Limit To All Plant Sequences

>Glyma04g02200.1   sequence type=CDS   gene model=Glyma04g02200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTAGAGTGGGGCGAACTACCTCCAGAACTCCTGGAATCAATCTCGAAAACCTTAACCATCTACGTCGATTACCTCAGATTCCGTTCCGTTTGCCGCAGCTGGCGATCCTCCGTTCCCAAAATCCCTCTCCACCTTCCTCCCCAACTCCCATGGCTCATGCTATCTCGCCGCGCCTTCTTCGACCTCTCCCTCAACAAAACCCATCTCCTCAACCCTCAACCCTCTCACCGCACCCGAATCTGCGGCTCCTCCCACGGCTGGCTCGTCATGCTCGACGAAACCCCCCAAATTCGCCTCCTGAACCCCCTCACGCGCGCCACGCGCCCCCTCCCTCCGCTTCACGCCTTCCCCAACGTCGTCGCCTTCGATCACGCCAACGTCGGACGCGAGTACCTCATCCAAAACCCTTACGGCGGCCTCTACGCCTTCAACTTGCGACAGATGTGCAATTCTTTCCTCGGAAAGGTTGTCTTGTCGGCGAGTCCCACATTAAACGATGATTTCGCCGCGCTCGCTATCGTCGGTCAGAATAACTTGGCGTTCTGCAGAAACGGTTACGATTCTTGGATTTTCCTGAACGGAGAGGAAGAAGAGATGAATTGCTGGGAAGATGTTGTGAATTACAACGGCTTGTTTTTCGCGGTGAGTAAGGGAGGGACTATTGCGGTGTGTGATGCTGGAGAGGGTTGTTTTCCGCCTCGGGTGTCGATAATTCAGACGACGACGCCGTTTGGATTCGCTGGGGATATCCACTATGCGGTGTTTTCGGCGGGAGACATGTTGCTGCTGATACGTGTTCTGGATCAGGACTTTTCCGATCACGCGGGGGAGGAGTCGGATTTGGTGTATAGGACGGTGGGTTTTGAGGTTTTCAAGATGAATTGGGGGTTGCTGACGTGGCAGAGAGTTGAGACTTTGGGCGAGCGAGTGCTGTTTGTAGGTGGGAATTCTTCGCTTTCGTTCTGTGCGTCTGATTTTGTTGGGTGTTCTGCGGATTGCATCTATTTCACCGACGATTATTCGGAGTCCAATGACGACGATGCGTGTGGGAAGCATGATTTGGGCGTATTTAGGTTACGGGATAAGAGCATTGAACCGTTGCCATGTTTTAATCAAAATTCCTGTTCTCGGCTTCGGTGGCCGCTACCAATTTGGGTTTCGCCAAATCCCTGTTGA

Predicted protein sequences of Glyma04g02200

Limit To All Plant Sequences

>Glyma04g02200.1   sequence type=predicted peptide   gene model=Glyma04g02200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVEWGELPPELLESISKTLTIYVDYLRFRSVCRSWRSSVPKIPLHLPPQLPWLMLSRRAFFDLSLNKTHLLNPQPSHRTRICGSSHGWLVMLDETPQIRLLNPLTRATRPLPPLHAFPNVVAFDHANVGREYLIQNPYGGLYAFNLRQMCNSFLGKVVLSASPTLNDDFAALAIVGQNNLAFCRNGYDSWIFLNGEEEEMNCWEDVVNYNGLFFAVSKGGTIAVCDAGEGCFPPRVSIIQTTTPFGFAGDIHYAVFSAGDMLLLIRVLDQDFSDHAGEESDLVYRTVGFEVFKMNWGLLTWQRVETLGERVLFVGGNSSLSFCASDFVGCSADCIYFTDDYSESNDDDACGKHDLGVFRLRDKSIEPLPCFNQNSCSRLRWPLPIWVSPNPC*

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