Glyma04g02160 - SoyBase

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Report for Sequence Feature Glyma04g02160

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1486748
stop:	1491211
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76150	AT	Annotation by Michelle Graham. TAIR10: enoyl-CoA hydratase 2 \| chr1:28575236-28577637 REVERSE LENGTH=309	SoyBase	E_val: 3.00E-163	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0007031	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome organization	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0033542	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation, unsaturated, even number	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0080023	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3R-hydroxyacyl-CoA dehydratase activity	SoyBase	N/A	ISS
KOG1206	KOG	Peroxisomal multifunctional beta-oxidation protein and related enzymes	JGI		ISS
PTHR13078	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13078:SF5	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01575	PFAM	MaoC like domain	JGI		ISS
UniRef100_B9R8I2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Estradiol 17 beta-dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9R8I2_RICCO	SoyBase	E_val: 4.00E-172	ISS
UniRef100_I1JSX9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JSX9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02160

Paralog	Evidence	Comments
Glyma06g02250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g019600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02160

Limit To All Plant Sequences

>Glyma04g02160.1   sequence type=CDS   gene model=Glyma04g02160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTGCATCAGAGTTCGACCCAGCGCTTGCGCTTTCTCACAAATTCCCTGATACTACGTACTCTTATACCGAAAGGGATGCAGCACTTTATGCCCTAGGCGTTGGGGTGTGTTTGTCAGACGCTGTTGACGGTGTTGAGCTTAAATATGTCTACCATGAAAATGGTCAGGGGTCTATCAAGGTCTTGCCTACGTTTGCTACTCTACTTGTACTTAGATCTGGGGCGAGTGGTTATAATCTCCCAGGTTTGGAATATGATCCACGCCTTCTACTTCATGGACAACAGTACATAGAATTATACAAACCACTTCCTTCAAGCTGTCATATACACAATATAGTAAGCCTTGCCGGATTACATGATAAAGGTAAAGCAGCAATTTTGGAGATTGAAACAAAAAGCTACGAGAAAGAATCTGGTGATTTATTGTGCATGAACAGGACAACTGTCTTTCTCCGTGGTGCTGGTGGCTTCTCAAAATCATCTAAGCCATTTTCTTATACAAATTACCCTATGAATCAGAATCCAGCTGTGAAAATTCCTGAAAGTAAACCTTTTTCAGTGTTTGAGGATCGTACCCAACCATCTCAGGCATTGCTCTATAGGCTATCTGGTGATTACAATCCTCTGCATTCAGATCCCATGGTTGCAAAGGTTGCTGGATTCTCGCAGCCAATATTGCATGGTCTGTGCACATTAGGATTTGCAGTTAGGGCAATCATCAAATGCATATGCAGAGGAGATCCAGACTTGATAAAAAGCGTAGCGGGCAGATTTCTTCTACATGTCTACCCCGGTGAAACTCTAGTTACTGAGATGTGGCTTGAAGGCTCAAGGGTAATATATCGGACTAAGGTGAAAGAGCGAAAGCGGACAGTTCTTTCTGGCTACGTTGGTCTGCGTGGTTTGACTTCGTCACTGTGA

Predicted protein sequences of Glyma04g02160

Limit To All Plant Sequences

>Glyma04g02160.1   sequence type=predicted peptide   gene model=Glyma04g02160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASEFDPALALSHKFPDTTYSYTERDAALYALGVGVCLSDAVDGVELKYVYHENGQGSIKVLPTFATLLVLRSGASGYNLPGLEYDPRLLLHGQQYIELYKPLPSSCHIHNIVSLAGLHDKGKAAILEIETKSYEKESGDLLCMNRTTVFLRGAGGFSKSSKPFSYTNYPMNQNPAVKIPESKPFSVFEDRTQPSQALLYRLSGDYNPLHSDPMVAKVAGFSQPILHGLCTLGFAVRAIIKCICRGDPDLIKSVAGRFLLHVYPGETLVTEMWLEGSRVIYRTKVKERKRTVLSGYVGLRGLTSSL*

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