Report for Sequence Feature Glyma04g02140
Feature Type: gene_model
Chromosome: Gm04
Start: 1477819
stop: 1485996
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g02140
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G76160 AT
Annotation by Michelle Graham. TAIR10: SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541
SoyBase E_val: 0 ISS
GO:0016126 GO-bp
Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process
SoyBase N/A ISS
GO:0052541 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process
SoyBase N/A ISS
GO:0052546 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0048046 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: apoplast
SoyBase N/A ISS
GO:0005507 GO-mf
Annotation by Michelle Graham. GO Molecular Function: copper ion binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
KOG1263
KOG
Multicopper oxidases
JGI ISS
PTHR11709 Panther
MULTI-COPPER OXIDASE
JGI ISS
PTHR11709:SF11 Panther
MULTICOPPER OXIDASE-RELATED
JGI ISS
PF00394 PFAM
Multicopper oxidase
JGI ISS
PF07731 PFAM
Multicopper oxidase
JGI ISS
PF07732 PFAM
Multicopper oxidase
JGI ISS
UniRef100_B9R8I7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9R8I7_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1JSX8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSX8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g02140
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g02140
Paralog Evidence Comments
Glyma06g02240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g02140 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g019500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g02140
Coding sequences of Glyma04g02140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g02140.1 sequence type=CDS gene model=Glyma04g02140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCGCTCAAGTTGGCGGGAGGAGCCACTGTCGGTTCCCTTCTCCTATGTGTTGCTATTTCTCTCTTTCACATCGCTGGGGCCGAAGATCCCTACAGGTTCTTCAACTGGAATGTTACTTATGGTGACATTTACCCTCTTGGTGTTCGCCAAACGGGAATATTGATCAACGGGCAATTCCCAGGTCCAGATATTCATTCTGTTACCAACGACAACCTCATCATCAATGTCTTCAACAGCTTGGATGAGCCCTTTCTTCTCTCTTGGAATGGGATCCAGCAGAGAAGGAACTCATTCGAAGATGGTGTTTTTGGAACAACGTGCCCCATCCCACCAGGGAAGAATTTTACTTACATCCTTCAAGTCAAAGATCAAATTGGGAGTTTTTACTATTTCCCATCCCTTGCATTCCACAAAGCCGCTGGCGGTTTTGGAGGCATTAGGATTCTCAGCAGACCAAGAATTCCCGTCCCATTCCCTGATCCAGCTGGTGATTACACTGTCCTCATTGGAGATTGGTACAAGTCCAACCACACGACTTTGAAAGCCCGTCTTGATAGGGGCAAGAAGCTGCCTTTTCCCGATGGAATACTTATCAATGGTCGCGGACCTAATGGAGTGTCTTTAAACGTTGAACAAGGAAAGACTTATAGGCTTAGAATATCAAATGTGGGGCTGCAACACTCCCTTAACTTTAGAATCCAAAACCACAAAATGAAGCTGGTAGAAGTGGAAGGAACGCACACCCTTCAGACAACGTACTCCTCTCTTGATGTTCATGTAGGCCAATCTTATTCAGTGCTGGTAACTGCGGATCAACCTGCTCAGGATTATTATATTGTGTTTTCCTCACGATTCTCCTACAAGGTCCTCACCACCACTGGAGTGCTTCGCTATAGCAACTCCGCAGGCCCGGTATCAGGCCCACCCCCTGGTGGACCTACAATCCAAATTGACTGGTCTTTGAACCAGGCCCGCTCCATTAGGACAAACCTTACAGCAAGTGGACCGAGGCCAAACCCGCAAGGATCGTACCATTACGGTATGATAAACACGACAAAGACGATCATATTGGCGAGTTCGGCTGGTCAAGTAAATGGGAAGCAAAGATACGCAATTAACAGCGTGTCTTATGTTGCCCCAGACACCCCTCTTAAGCTCGCCGATTACTTCAAAATCTCCGGTGTTTTCCGCCCCGGAAGCATATCTGACAGACCCACTGGTGGCGGCATTTACCTTGACACTTCTGTGTTACAAGCTGACTACAGAACTTTTGTTGAGATTGTCTTCCAAAACAACGAGAAAATCGTTCAGAGCTACCATCTTGATGGCTACTCTTTCTTTGTCGTTGGTATGGACGGGGGACAGTGGACACCTGCTAGCAGGAACCAGTACAATCTCCGAGATGCAGTTGCACGTTGCACCACACAGGTATACCCCTTTTCATGGACTGCTATTTATATTGCCCTTGACAATGTGGGAATGTGGAACTTGAGGTCTGAGTTTTGGGCACGACAATACCTTGGGCAACAGTTATATTTACGCGTTTATACAGCATCAACCTCAATCAGAGACGAGTTCCCTGTTCCAAAGAATGCAATTCTTTGTGGTAGGGCTAGTGGGAGACACACGCGACCCCTTTGA
Predicted protein sequences of Glyma04g02140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g02140.1 sequence type=predicted peptide gene model=Glyma04g02140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPLKLAGGATVGSLLLCVAISLFHIAGAEDPYRFFNWNVTYGDIYPLGVRQTGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQQRRNSFEDGVFGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTTLKARLDRGKKLPFPDGILINGRGPNGVSLNVEQGKTYRLRISNVGLQHSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAQDYYIVFSSRFSYKVLTTTGVLRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINTTKTIILASSAGQVNGKQRYAINSVSYVAPDTPLKLADYFKISGVFRPGSISDRPTGGGIYLDTSVLQADYRTFVEIVFQNNEKIVQSYHLDGYSFFVVGMDGGQWTPASRNQYNLRDAVARCTTQVYPFSWTAIYIALDNVGMWNLRSEFWARQYLGQQLYLRVYTASTSIRDEFPVPKNAILCGRASGRHTRPL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
