Glyma04g02080 - SoyBase

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Report for Sequence Feature Glyma04g02080

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1439404
stop:	1442824
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20530	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) \| chr1:7108370-7110377 REVERSE LENGTH=614	SoyBase	E_val: 3.00E-109	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21450	Panther	UNCHARACTERIZED	JGI		ISS
PF04782	PFAM	Protein of unknown function (DUF632)	JGI		ISS
PF04783	PFAM	Protein of unknown function (DUF630)	JGI		ISS
UniRef100_G7KFE1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP107 n=1 Tax=Medicago truncatula RepID=G7KFE1_MEDTR	SoyBase	E_val: 5.00E-110	ISS
UniRef100_UPI000233A817	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A817 related cluster n=1 Tax=unknown RepID=UPI000233A817	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02080

Paralog	Evidence	Comments
Glyma06g02181	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g018900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02080

Limit To All Plant Sequences

>Glyma04g02080.2   sequence type=CDS   gene model=Glyma04g02080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTGCAACACCTCGAGACTTGACCGGCTACCGGCGGTGGCACTGTGCCGTGACCGTTGCAAGTTCTTGGACGACGCGCTTCGCCAAAGCTACGCCCTCGCCGACGCACACGTGGCACACATGGAGGCCCTCAAAACACTTGGCCACGCTCTCCTCTGTTTCTTCGACGGTTTCGAGGATTCCGACGAAACTAATGTCCCAAATAAGGAAACCAAAGTTCCTGTCGCCACGAAATCTCCACCCCCTCACTCCCCTTCTTCCTTTAGTTCGGACTCAGACGACGCACACGTGCTTTTGCATTCCGAATCAGAAACCGAAGACGCAGAAAAAGAAGAGTTCCAATTGTTCACTCACGCGCGTTATGACTACGCTCACTCGGCTCGTTACCCCCCGTTTTCTCCGCCGCGTGGCTATTCCGGCTCGAAGCCGCCGTCTCCGCCGCCTCCTTCCGGCTCCGCCTGGGATTTCCTTAACTTCTTCGAGCCGTACGAGAAGTACCACGTGCCTTATTTTCCTGGCGGCGGTGACGCTGACGTGGCCGAGAATGAAAAGGGGAAGGTTGAGAAACGTGACGGGTCTAAATCTAAGGAGGAAAATGGAGAAGCGAAGAAAAAGAAGGGTGATTCGAAGGAGAAGAAGGTGGTTTCTGAGAAAGCGGAAGTTGTATTAGTTTCAGAGCAATGTAGTGACTCTGCGAAAGGTTTCTCTGAGGCAGTGAAAGAGATTCAGATTCTGTTTGAGAAAGCGTCGGAGTCGGGGAACCCCGTTTTGGAGATGCTGGACGCTGGGAAACTCCGTTACCATCGAAAATTTGACCTCAACCCGGTTTCGTGCAAGATGATGCATGTGTTTACTCCCTCAAGTCCTCTTGGGGTTAGATGCATGAAATCCTCGGTTGGGCGGAGAATGGGATCTGGGTATGAAGGAGACAAGGATCTCACTTACGCCAATCTCTGCTCTACTCTGAAAAAACTATGTATGTGGGAGAAGAAGCTGTATCATGAAGTCAAGGCTGAGGAGAAATTGCGTATGCTTCATCAGAAGAAGTGTAAGCAGTTGAGACGTATGAAACAAAAGGATGCCGATGCACAGAAAATTGATTCTGTTCAAACTTTCATTGGGATTTTATCTACAAAAATGAAAATTTCTATCCAAGTAGTTGACAAGATATCTATTACAATTAGTAAGTTGAGAGAAGAGGAGCTGTGGCCGCTGATCTACAGGTTTATTCTCACGTTTCTCGGAATGTGGAAAGATATGCAAGAATGTTACAAATGCCAATATCAGCAAATTGTTGAAGCCAAAACTTTAGATGCCTTATCGTTAAACACAAAGCCTGGCAATGCTCATATTGATGCAACAATAAAACTCAAATCTGAGGTACAGAAATGGAATTTGAGCTTCTTAGATTGGATTCACGCCCAGAGGTCCCATGTGAAAGCCTTGAATGGTTGGCTGGTAAGATGTCTATTATACGAACCCGAAGAAGTACCCGATGATTCAACTCCCTTCTCACCTAGCAAGATTGGGGCACCACCTGTGTTTGTGATCTGTCACAAATGGTCAAGGGCAGTGGATAATCTCTCAGAGAAGAATGTAATTGAAGCCGTAAATGGGTTCATGCTACGAGTGAACGAGCTCTTGGAAAAGCATATTTTAGACCTTCAACAAAAACTAACATTGGACAAAGAATTTGAGAGAAAGGTGAAAATGTTGGAGAGGGAGGAGCAAAAGATGCACAAAGTGATGCGGGCTCATGAGAGGAAGATGGTTACAGTTGGCAGAGAAGAATCTGATGCACTTTTACGTGGAGATGCTGTGCATCACGCTGATATCGTTGATTCTACTAACCTACAATCAAGTTTGAAGCAGATCTTTGGTGCCATGGAAAAGTTCACAGACTCCACTGTTCGCTTATATGAAGAACTTTGTCAACAAATTAAGCAAGAGGATCATGTTTTGGGAGAAACCAACAAAATTAGCTAG

Predicted protein sequences of Glyma04g02080

Limit To All Plant Sequences

>Glyma04g02080.2   sequence type=predicted peptide   gene model=Glyma04g02080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCNTSRLDRLPAVALCRDRCKFLDDALRQSYALADAHVAHMEALKTLGHALLCFFDGFEDSDETNVPNKETKVPVATKSPPPHSPSSFSSDSDDAHVLLHSESETEDAEKEEFQLFTHARYDYAHSARYPPFSPPRGYSGSKPPSPPPPSGSAWDFLNFFEPYEKYHVPYFPGGGDADVAENEKGKVEKRDGSKSKEENGEAKKKKGDSKEKKVVSEKAEVVLVSEQCSDSAKGFSEAVKEIQILFEKASESGNPVLEMLDAGKLRYHRKFDLNPVSCKMMHVFTPSSPLGVRCMKSSVGRRMGSGYEGDKDLTYANLCSTLKKLCMWEKKLYHEVKAEEKLRMLHQKKCKQLRRMKQKDADAQKIDSVQTFIGILSTKMKISIQVVDKISITISKLREEELWPLIYRFILTFLGMWKDMQECYKCQYQQIVEAKTLDALSLNTKPGNAHIDATIKLKSEVQKWNLSFLDWIHAQRSHVKALNGWLVRCLLYEPEEVPDDSTPFSPSKIGAPPVFVICHKWSRAVDNLSEKNVIEAVNGFMLRVNELLEKHILDLQQKLTLDKEFERKVKMLEREEQKMHKVMRAHERKMVTVGREESDALLRGDAVHHADIVDSTNLQSSLKQIFGAMEKFTDSTVRLYEELCQQIKQEDHVLGETNKIS*

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