Glyma04g02030 - SoyBase

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Report for Sequence Feature Glyma04g02030

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1399462
stop:	1405144
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20540	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr1:7112652-7115191 FORWARD LENGTH=351	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1007	KOG	WD repeat protein TSSC1, WD repeat superfamily	JGI		ISS
PTHR14205	Panther	WD-REPEAT PROTEIN	JGI		ISS
PTHR14205:SF1	Panther	gb def: hypothetical protein y87g2a.v - caenorhabditis elegans	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_D7KJ27	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transducin family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KJ27_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1JSW6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSW6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02030

Paralog	Evidence	Comments
Glyma06g02130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g018500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g02030

Limit To All Plant Sequences

>Glyma04g02030.2   sequence type=transcript   gene model=Glyma04g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCTGAACAACTGGCCCTTAAACACGGTTTCAGAAAAAAATAAAAAACAGCGAGCAGAAAGCAACGGCGTTGCCATTTTCCGTGTTTAACTCTGCTCTCTCAGGGCAGTGTGTGGATTGAGGTGTCGCACGGTGGGTGTAGCAGTAGATTCCGCCTCCAAGAAAAGAAAGAGCAATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAACAAATCATGATGAGTTAACAACTGAAAGACAAGTCGATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGTAAAGAGGGCTCACATGGAGTTCTCGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTAGAATCAGTTAAGCCTTTCATCTCCAAAAAATAAAGTTCAGCACCAATTGCCATGTTGCCATCATTTGTCATGTCATCTTCTTGTGTATGTCAGTAATTTCCTGCCTCTCGGGTCTTGAGATAAATAGATCTGAAAGACCCTAATATTTATTCCATCATGTCACCGTTGCTGGGTTTGACGAGGCTGAACAGGTTTAATGTTACATGTGCATTACATCTTTGACGAGAAAGCATTGATAGCTCAGAAATCAACATTTTTGGTTTTATCTTTTTTATCTTTCAACGTTGAATGGTTTTAGGCTGGATTATGTGCAAGTTTATTCTTTGATTAGACATCCATGCTATGTAATTCGTGGAGTCGTTGTATATCTATGGAACTACAAGTTCATACAAGTTCTTTCTTTGTATCTCGAGTTTGTCCTCTAATATGTCTTCGTGGAAAGGTAATAAATCTACTGTAATTGGGAAACAGAAAGTTGCTATATGAAATTGGCTGAGTGTCGTTATAGCA

>Glyma04g02030.3   sequence type=transcript   gene model=Glyma04g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCTGAACAACTGGCCCTTAAACACGGTTTCAGAAAAAAATAAAAAACAGCGAGCAGAAAGCAACGGCGTTGCCATTTTCCGTGTTTAACTCTGCTCTCTCAGGGCAGTGTGTGGATTGAGGTGTCGCACGGTGGGTGTAGCAGTAGATTCCGCCTCCAAGAAAAGAAAGAGCAATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACACACACACAGGGATGTAGATCCTCTTAAGTGAGTTTGTTTCTAAAGCAAAGGGTGTATTGATCCTTGATTTATTTTAAAGTGGATGGTGAGCTTATCCAACTAAAATTTGAGGGTGGATTCACCCTTAATTGCTTACTTTAGATATAAACTTGCTTTAGAGAAGCTTTTTCCCACACCCACATGTGCACACATACAAACATGCATTTTTAATGACTTCTAAATCTCTTGCTGGTGTCCATTTGTTGGTCAAAGGTTGTCTGCATACTAAATTATCATGTAGGGGATATTTAGTTATTTTTCATGGAATGTGGATGTTACAGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAACAAATCATGATGAGTTAACAACTGAAAGGTCATCTTATTATCTTAAGATATTACTATATTACATTTTATTTTAGGACTACTTTTTATTCATCTATGCTTACTTTTTAGCAGACAAGTCGATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGTAAAGAGGTTCAAGTTTTTCAATCCATCTTTAGTTTTGTTTAGCTTTTGCTTCTTTTGCCAACTTTGACATGGTTTTAAGCTCTAACATACATACAAAACATCATTTCAAACACACACACAAACTTTTCTTCACAAATATTTTATTCATGTTACAGGGCTCACATGGAGTTCTCGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTAAGACTACAAGTAAATCTTTAGGCTAATTCTCAATGGTAGATGATAAATTCTCTTAATG

Coding sequences of Glyma04g02030

Limit To All Plant Sequences

>Glyma04g02030.1   sequence type=CDS   gene model=Glyma04g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAACAAATCATGATGAGTTAACAACTGAAAGACAAGTCGATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGGCTCACATGGAGTTCTCGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTAGAATCAGTTAAGCCTTTCATCTCCAAAAAATAA

>Glyma04g02030.2   sequence type=CDS   gene model=Glyma04g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAACAAATCATGATGAGTTAACAACTGAAAGACAAGTCGATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGTAAAGAGGGCTCACATGGAGTTCTCGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTAG

>Glyma04g02030.3   sequence type=CDS   gene model=Glyma04g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACACACACACAGGGATGTAG

Predicted protein sequences of Glyma04g02030

Limit To All Plant Sequences

>Glyma04g02030.1   sequence type=predicted peptide   gene model=Glyma04g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDSGKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKTAQVQSQDSAGMLHKLSGGAWDPHDVSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHILVTAEHESGIHIWDLRKPKVPIQELPGHTHWTWTVKCNPEYDGMILSAGTDSTVNLWLASTNHDELTTERQVDSSARWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVVESVKPFISKK*

>Glyma04g02030.2   sequence type=predicted peptide   gene model=Glyma04g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDSGKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKTAQVQSQDSAGMLHKLSGGAWDPHDVSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHILVTAEHESGIHIWDLRKPKVPIQELPGHTHWTWTVKCNPEYDGMILSAGTDSTVNLWLASTNHDELTTERQVDSSARWVDPLLNTYSDYEDSIYGKEGSHGVLVNHGSLHHYPMMAGLL*

>Glyma04g02030.3   sequence type=predicted peptide   gene model=Glyma04g02030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDSGKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKTAQVQSQDSAGMLHKLSGGAWDPHDVSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHILVTAEHESGIHIWDLRKPKVPIQELPGHTHWTWTVKCNPEYDGMILVLSLSLSLSLFHTHTGM*

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