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Report for Sequence Feature Glyma04g02021

Feature Type:gene_model
Chromosome:Gm04
Start:1388214
stop:1395049
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g02021
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G42430AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3). | chr1:15891512-15894322 FORWARD LENGTH=409 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q8H8C6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8H8C6_ORYSJ SoyBaseE_val: 2.00E-174ISS
UniRef100_UPI0002339376UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339376 related cluster n=1 Tax=unknown RepID=UPI0002339376 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g02021
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g02021 not represented in the dataset
Glyma04g02021 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02021
ParalogEvidenceComments
Glyma06g02120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02021 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g018400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g02021
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g02021
>Glyma04g02021.1   sequence type=CDS   gene model=Glyma04g02021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGAGTTCTAGAGGCTTCTCCACGACGCAGTTTGATTTCAAGCTCAGAGTAATGCGACTCAATGCCGCTCTTCTTCCTAAGAGTCACGTGCTCGAATTTGGTCCCAGAAAGCGTAGAAAGCTCTGTTTCGACTCTGACCGAGTTCGACTCGGTGATGGCGCAATGCGCTGTTGCTGTTCCGACTCGGTTACTCCGATTCGCAGAACGAGTGGACCTGGCAACGGCAGTGACAAGAACGAGGAGTGGAGGTTCGATACCAAAAAACCCCCTCACATTCACAGAGTGAGGGTTCAGGCCTCCCCTGCCGCAATGCCTTTCGCTTCTCCACCACACTGGTTAGCAAATGAGAAGGACTGGGGTATCAGCTTGTTAAACGAAAATGTTAATGAGTCTGGCACTAATGAAGATGGGAGTGCCTGGTACCGAGAAAGTGGGGAAGAACTGGGTGAAAATGGATATAGATGTAGATGGACAAGAATGGGTGGTCAATCCCATGATGGTTCCTCAGAATGGAAAGAAACGTGGTGGGAGAAGAGTGACTGGACTGGATATAAGGAGCTAGCTCTTGCAGGTGTGGAGAAATCTGGTAGAAATTCTGAGGGGGATACTTGGTGGGAAACATGGCAGGAAAATCTTCATCAAGATGAATGGAGTAACATAGCAAGAATAGAAAGAAGTGCACAAAAACAAGCAAAATCAGGAACTGAAAATGCTGGATGGTATGAAAAATGGTGGGAAAAGTATGATGCTAAAGGCTGGACTGAGAAAGGGGCACATAAGTACGGTAGACTGAATGAACAATCATGGTGGGAAAAGTGGGGAGAGCATTATGATGGAAGAGGATCTGTTCTCAAATGGACAGATAAGTGGGCAGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAGGAGAGATTCTTTAAAGGCATAGGTTCAAGACATGGAGAAACATGGCACGTATCTCCAAGCAGTGAACGTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGAAATGGGAAAGTCCATAAGTATGGAAATAGCACAACTGGTGAGAGCTGGGATATAGTTGTAGACGAGGAAACTTATTATGAGGCCGAACCTCATTATGGATGGGCGGATGTTGTGGGTGATTCAACCCAATTACTTTCAATTGAGCCTCGGGAGAGGCCTCCTGGTGTCTTCCCTAATTTAGACTTTGGTTCACCTCCATCGCCTGAAGCTCATGATGACTCACCTGATGAAGATTTTCCCTCTTCACAATGA
Predicted protein sequences of Glyma04g02021
>Glyma04g02021.1   sequence type=predicted peptide   gene model=Glyma04g02021   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSRGFSTTQFDFKLRVMRLNAALLPKSHVLEFGPRKRRKLCFDSDRVRLGDGAMRCCCSDSVTPIRRTSGPGNGSDKNEEWRFDTKKPPHIHRVRVQASPAAMPFASPPHWLANEKDWGISLLNENVNESGTNEDGSAWYRESGEELGENGYRCRWTRMGGQSHDGSSEWKETWWEKSDWTGYKELALAGVEKSGRNSEGDTWWETWQENLHQDEWSNIARIERSAQKQAKSGTENAGWYEKWWEKYDAKGWTEKGAHKYGRLNEQSWWEKWGEHYDGRGSVLKWTDKWAETELGTKWGDKWEERFFKGIGSRHGETWHVSPSSERWSRTWGEEHFGNGKVHKYGNSTTGESWDIVVDEETYYEAEPHYGWADVVGDSTQLLSIEPRERPPGVFPNLDFGSPPSPEAHDDSPDEDFPSSQ*






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