Glyma04g02010 - SoyBase

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Report for Sequence Feature Glyma04g02010

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1381096
stop:	1387849
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g02010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76270	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr1:28613554-28616537 REVERSE LENGTH=572	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_I1JSW4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSW4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q949U4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: O-fucosyltransferase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q949U4_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g02010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g02010

Paralog	Evidence	Comments
Glyma06g02110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g02010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g018300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g02010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g02010

Limit To All Plant Sequences

>Glyma04g02010.1   sequence type=CDS   gene model=Glyma04g02010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACATCAGCGCCGGCGCCACCACTATTACCAACGCTTCCGTCACATGATTCCAGTGTTTTCCGCCGTCGCCGCCGCGCTATTCTTTCTCTTCGCTCTCCTTTCGTTTTTAGCTCCTTCTCCCGTCGAAACCGATCGTATCCACCGGAGACGCCAACACACTTCGGTTAACGTTCAAAAGGATGATGCGATTGACAATCCTGCGTTCCGCGTTCCGGGTGATGGAGGAAAGTTGGGACGCGATATCTGGAGTTCTCTAAATTCGGAACACTTCTTTGGATGTAGCAATTCCAGCAACAAGTTTCAAAAAGCTCAAGTGATTACACAACCGAATCGGTATTTGATGATTGCAACAAGTGGAGGCTTGAATCAACAAAGAACTGGGATTACGGATGCTGTTGTTGCTGCACGAATTTTGAATGCTACTCTTGTGGTTCCAAAATTGGATCAACGATCTTTCTGGAAAGATTCTAGTAACTTCTCAGAGATCTTTGATGTTGATTGGTTTATATCATTTCTGTCAAAAGATGTCAAAATTATCAAGCAACTTCCCACTAAGGGTAGGAAAGCATTATCTGCATACAATATGCGGGTTCCAAGGAAGTGTAATGAAAGATGTTACATAAATCGCATATTACCTGTACTCCTTAAAAAGCATGCTGTTCAGCTCAGCAAGTTTGACTACAGGCTTGCTAACAGGTTGGATACAGAATATCAGAAGCTGAGATGTAGAGTTAATTACCATGCTTTAAGATTTACCAACCCAATACTTGCAATGGGTGAAAAATTGGTCCATCGGATGAGGATGAGAAGCAAGCATTATATTGCACTGCACCTGAGATTTGAACCTGATATGCTTGCATTTTCTGGATGTGATTATGGTGGAGGGGAGAAGGAGCAGAAGGAACTGGGTGCAATAAGAAGGAGGTGGAAGACATTACATAGAAGCAATCCTGATAGGGCAAGGAGGCAGGGGAGATGCCCATTAACCCCCGAAGAAGTTGGTCTCATGCTAAGAGCATTGGGATATGGTTCTGACATTCATATTTACGTTGCATCAGGGGAGGTATATGGAGGGGAAAGAACATTGGCACCTCTCAAAGCATTATTTCCTAATTTCCATTCAAAAGAGACCATTGCTACCAAGGAAGAATTAGAACCGTTTTCTTCATTTTCTTCTCGCATGGCTGCACTCGACTTCATTGTTTGTGATGAAAGTGATGTTTTTGTAACCAATAATAATGGAAATATGGCAAAAATATTGGCTGGACGAAGGAGATACTTTGGCCATAAACCAACCATTCGTCCAAATGCTAAAAAACTTTATCGATTGTTCTTGAATAGAAGTAATTCGACTTGGGAAGCTTTTGCTTCTAGTGTCCGAACTTTCCAGAAAGGCTTCATGGGAGAGCCAAAGGAGGTTAGACCAGGTAGAGGCGGGTTTCATGAGAATCCATCATCATGCATATGTGAAGATTCTGCAGCAGCCAAAGTGGACAAAAATTCACAATCTAGAAAATATGGGAAGGATAATACAACGAAGAAAAATGTAGCAAATGATGAACTGGATGTTGACAATGTGTCTGAGTGGCCAGACATGGATGATGATGACGATGATCAGAATGATCTAGCAGAGAAGGGTACATTCAATGAAACAATTTCGGATTATGATGCTCTGAACTTCGAGGATCCCGAGTTGGAGGAAATTATATCAGATTAG

Predicted protein sequences of Glyma04g02010

Limit To All Plant Sequences

>Glyma04g02010.1   sequence type=predicted peptide   gene model=Glyma04g02010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHQRRRHHYYQRFRHMIPVFSAVAAALFFLFALLSFLAPSPVETDRIHRRRQHTSVNVQKDDAIDNPAFRVPGDGGKLGRDIWSSLNSEHFFGCSNSSNKFQKAQVITQPNRYLMIATSGGLNQQRTGITDAVVAARILNATLVVPKLDQRSFWKDSSNFSEIFDVDWFISFLSKDVKIIKQLPTKGRKALSAYNMRVPRKCNERCYINRILPVLLKKHAVQLSKFDYRLANRLDTEYQKLRCRVNYHALRFTNPILAMGEKLVHRMRMRSKHYIALHLRFEPDMLAFSGCDYGGGEKEQKELGAIRRRWKTLHRSNPDRARRQGRCPLTPEEVGLMLRALGYGSDIHIYVASGEVYGGERTLAPLKALFPNFHSKETIATKEELEPFSSFSSRMAALDFIVCDESDVFVTNNNGNMAKILAGRRRYFGHKPTIRPNAKKLYRLFLNRSNSTWEAFASSVRTFQKGFMGEPKEVRPGRGGFHENPSSCICEDSAAAKVDKNSQSRKYGKDNTTKKNVANDELDVDNVSEWPDMDDDDDDQNDLAEKGTFNETISDYDALNFEDPELEEIISD*

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