Report for Sequence Feature Glyma04g01990
Feature Type: gene_model
Chromosome: Gm04
Start: 1360026
stop: 1372881
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g01990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G42440 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131;
SoyBase E_val: 0 ISS
GO:0009165 GO-bp
Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process
SoyBase N/A ISS
GO:0042254 GO-bp
Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1980
KOG
Uncharacterized conserved protein
JGI ISS
PTHR12858 Panther
RIBOSOME BIOGENESIS PROTEIN
JGI ISS
PTHR12858:SF1 Panther
RIBOSOME BIOGENESIS PROTEIN TSR1 (20S RRNA ACCUMULATION PROTEIN 1)
JGI ISS
PF04950 PFAM
Protein of unknown function (DUF663)
JGI ISS
PF08142 PFAM
AARP2CN (NUC121) domain
JGI ISS
UniRef100_B9R8L9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein tsr1, putative n=1 Tax=Ricinus communis RepID=B9R8L9_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1JSW0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSW0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g01990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g01990
Paralog Evidence Comments
Glyma06g02090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g01990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g018100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g01990
Coding sequences of Glyma04g01990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g01990.1 sequence type=CDS gene model=Glyma04g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGGGTCGCGAGTTCAAGTCAACAAACCTCACAAGTCCCGTTTTTCATCCAAATCTTCTCGCAACCTTCATAAAACCTCTGTCAAGGACAGACTCGCAATCGCAAAATCAGAGCGCAATGTCGGCAAAGGAGCTCGTGCAGCTCGAATTCAGAGAAATAAAATGATACGTGATCAGAAAAGAGCTGCTGTTTTGAAAGAAAAAAGAGAACTCAGTGGGTCGAGAAGTCCTCCCCGAGTGATAGTTCTCTTCGCCCTCTGTGCTTCTGTGGATTTAGAATCACTTGCTGATGATCTCTTGTCGTTATTATCTAAAGATACTTGTGTGGTGCTGTCAGGAACCGTTGCTTCTTCTGAATATAGGACAAGAATAACGGTACTAAAAGCACCCCATGGCGATCTACTATCATGCATGGAAATGGCCAAGGTTGCTGATCTAATGGTTTTTGTGGCCTCGGCAAGGTCTTCATGTGAAGAAACTGATTCCTACTACATTGACTCATTTGGAAATCAATGCCTTTCTGTATTTAGATCTCTTGGTTTACCAAGCACTGCTGTGTTTATTCGTGATCTATCTACTGATCTTAAACAAAGAAATGAACTAAAGAAGATGTGCACATCTAGTCTTGCCTCGGAATTTCCTGAGGATTGTAAATTTTATCCAGCTGATACAAAGGATGAGCTACACAAGTTCTTGTGGCTCTTTAAAGAGCAAAGGCTTAAAGTTCCTCATTGGAGAACTCAACGATCATACCTCTTGTCTCAAAAGGTTGATGCAGAATATGATGGCAACTCTGAAAAATGCACCCTGTTTCTCACTGGTTACCTTCGTTCTCGTAACCTCTCAGTCAATCAACTGGTTCATGTTTCAGGTGCAGGAGATTTCCAATTGTCTAAAATTGAAGTTCTTAAAGATCCTTGTCCTTTGAATTCAAGGAAAAATCAGGACCTAATGGATGCTGATGAAATGCATGATGCAGAGGTCATTGGTTCTCTAGCTCCTGATCCTCAAAACCAGGAAGCCTTAGTGGTTGAGAATATACCTGATCCTCTTGCTGGAGAGCAGACATGGCCAACAGAGGCTGAAATTGCTAAGGCTGATGAAGATAAAAAGAAAAAGAAGATAAAAAAGAGGAGTCTTCCTCATGGCACTTCAGAATATCAGGCTGCTTGGATTGTGGACGATTCTGATGAGGAGGAGTCGGATTGTGACAATGAAAACGATGATGGTATGGTGTTGGATGAAGGGGAGGATGGATTTCCTGGTCAAGAAAACAGGTATTCAGACTTTGATGGTGATGGGGCTTCTCTTAGATTGGGAGATTCTGATGAAGAAACTGACATTGATTCAGTGATGATGGAAGTAGATAATTTGACGAGAGAAAAGATAGAAGATGAACTCAAGGAACTTAAAGAAGCACATGCTGCAGATGAGGAGTTTCCTGATGAAGTGGATACACCATTGGATGTTCCTGCTAGGAAGCGGTTTGCAAAATACAGGGGACTCAAGTCCTTTAGGACTTCTTCATGGGATCCTAAAGAATCTCTACCCCAAGATTATGCCAGAATTTTTGAATTTGATAATTTTAAAAGAACACAAAAACACGTTCTTGCTAAAGCTTTAGAACTGGATCAAGAAAACCGGGAGGACTGTATTCCAGTTGGCTCGTATGCTAGGTTGCATATCATGGGAGTGCCCAGTGCTGTTGCTTCAAAGTTATCTTTGCTTGCAAAGACAATCCCGGTTACAGCATGTGGGCTGTTGAAACATGAGTCCAAAGTATCTGTCCTTCATTTCAGTGTGAAGAAGCATGAAACATATGATGCACCCATCAAATCCAAGGAAGAGTTAATTTTCCATGTTGGGTTTCGGCAATTTGTTGGCAGGCCAATTTTCTCTAGCGAGTTCATAAATACAGACAAGAACAAGATGGAGAGGTTTCTCCATGCTGGGCGTTTTTCAGTTGCTTCAATCTATGCTCCAATTTCTTTTCCTCCTCTTCCTACGATAATCCTAAAAAGAGCTGGAGAGGATGCTGCACCTGCAGTGGCTGCTGTTGGCTCACTGAAAACTGTTGATGCAGATAGGATAATCCTTAAGCGTGTTATTTTGACAGGTTATCCCCAGAGAGTATCAAAACGTAAAGCTTCTGTGAGACACATGTTTTATAATCCGGAGGATGTTAAATGGTTTAAGCCTGTCGAGCTTTATACCAAACGTGGTCTTCGTGGTCGAATAAAAGAACCTGTTGGTACACATGGTACAATGAAGTGCCTTCTTAACGGGGTTCTTGAACAGCGTGATACTGTATGTATGAATTTATTCAAACGTGCATACCCGAAGTGGCCAACCCATCATTTTCCTCTATCTGAATAA
Predicted protein sequences of Glyma04g01990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g01990.1 sequence type=predicted peptide gene model=Glyma04g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGGSRVQVNKPHKSRFSSKSSRNLHKTSVKDRLAIAKSERNVGKGARAARIQRNKMIRDQKRAAVLKEKRELSGSRSPPRVIVLFALCASVDLESLADDLLSLLSKDTCVVLSGTVASSEYRTRITVLKAPHGDLLSCMEMAKVADLMVFVASARSSCEETDSYYIDSFGNQCLSVFRSLGLPSTAVFIRDLSTDLKQRNELKKMCTSSLASEFPEDCKFYPADTKDELHKFLWLFKEQRLKVPHWRTQRSYLLSQKVDAEYDGNSEKCTLFLTGYLRSRNLSVNQLVHVSGAGDFQLSKIEVLKDPCPLNSRKNQDLMDADEMHDAEVIGSLAPDPQNQEALVVENIPDPLAGEQTWPTEAEIAKADEDKKKKKIKKRSLPHGTSEYQAAWIVDDSDEEESDCDNENDDGMVLDEGEDGFPGQENRYSDFDGDGASLRLGDSDEETDIDSVMMEVDNLTREKIEDELKELKEAHAADEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQDYARIFEFDNFKRTQKHVLAKALELDQENREDCIPVGSYARLHIMGVPSAVASKLSLLAKTIPVTACGLLKHESKVSVLHFSVKKHETYDAPIKSKEELIFHVGFRQFVGRPIFSSEFINTDKNKMERFLHAGRFSVASIYAPISFPPLPTIILKRAGEDAAPAVAAVGSLKTVDADRIILKRVILTGYPQRVSKRKASVRHMFYNPEDVKWFKPVELYTKRGLRGRIKEPVGTHGTMKCLLNGVLEQRDTVCMNLFKRAYPKWPTHHFPLSE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
