Glyma04g01980 - SoyBase

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Report for Sequence Feature Glyma04g01980

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1354948
stop:	1359289
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42310	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein \| chr5:16915860-16918238 FORWARD LENGTH=709	SoyBase	E_val: 0	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9R8M0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R8M0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JSV8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSV8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01980

Paralog	Evidence	Comments
Glyma06g02080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g018000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01980

Limit To All Plant Sequences

>Glyma04g01980.2   sequence type=transcript   gene model=Glyma04g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTAGACTTGGTTTTGTAGTAATTTTTAATGAACGACCTGGTTATATCTTTGACGTAGTAACGTATTTGGTTCATACCAAAAATATCCAATTTGAATCCAACTGGGTCATCTTGATGATAAACAATAACATAACATGAACCTTTTACCACCACAACTAACAACAACCCCCTTCCCTTCCCCATCCACCCACCGCCACAGCCACCACAACAACATCCATTTCCTCCCGCCGCCGCAATCCTCCGCAAGCCCCATAACCGCCAAACCAACCATCCTCGAAGAAGGCCCCGACGACATCCTCTCCCTTCACAACCGCCGCTACGACTTCACCCCCCTCCTCAGCTTCCTCTCCACCACTTCCAACTCAAGCCCTCCCACCTCACTCGACTCAACCGAGTTCCAACTCGCCGAGTCCTACCGCGCCGTCCCTGCCCCACTCTGGCACGCCTTCCTCAAGTCTCTCTGCGCCTCCTCCTCCTCCTCCTCCTCCATCGCCCTCGCGTACGCCGTCGTTTCATGGCTCCAGAAACACAATCTCTGCTTCTCCTACGAGCTCCTCTACTCCATCCTCATCAACGCCCTCGGCCGCTCCGAAAAGCTCTACGAAGCCTTCCTACTCTCCCAGCGTCAGGTCCTCACTCCCCTCACCTACAACGCGCTCATCGGCGCGTGCGCCCGAAACGGCGACGTCGAGAAAGCCCTAAACCTAATGTCCAAAATGCGCCGCGACGGTTACCAGCCGGACTTCGTCAACTACAGCTCCATCATTCAGTACCTGACGCGCTCCAACAAAATCGACTCTCCAATTCTCCAGAAACTCTACGCCGAAATCGAGACCGATAAAATCGAAATCGACGGCCACCTCATGAACGACATCATTGTAGGATTCTCCAAAGCCGGCGATCCGACTCGCGCGATGCGGTTTCTAGCTATGGCTCAGAGCAACGGACTGAACCCTAAGCCCTCGACGCTTGTGGCGGTTATCTTGGCGCTTGGGAATTCGGGAAGGACGCATGAGGCTGAAGCGTTGTTTGAGGAGATTAGAGAGAACGGCTTGGAACCGAGAACTAGGGCTTATAATGCTCTGCTTAAAGGTTACGTGAGAACGGGTTCGCTTAAGGATGCGGAGTTTGTGGTCTCTGAAATGGAGAAGGCTGGGGTCAAGCCTGATGAGCAAACTTATAGTTTGTTGATTGACGTGTATGCGCACGCGGGGAGGTGGGAGAGTGCGAGGATTGTGTTGAAGGAGATGGAAGCGAGCAATGTGCAACCTAATTCTTATGTTTTTAGTAGAATCTTGGCGAATTATCGCGACAAAGGGGAGTGGCAGAAATCGTTTCAGGTTCTGAAGGATATGAAGAGCAGTGGTGTGCAGCCTGATAGGCATTTTTACAATGTGATGATTGATACGTTTGGGAAGTATAACTGCCTTGATCACGCCATGGCCACGTTTGAGAGGATGTTGTCCGAGGGGATTCCGCCGGATATCGTTACTTGGAACACGCTGATCGATTGTCATTGTAAGTCGGGACGCCACGATATGGCCGAGGAATTGTTCAGTGAAATGCAGCAGAGGGGATACTCGCCTTGCATCACTACTTATAACATTATGATTAACTCTATGGGGGAGCAGCAGAGGTGGGAGCAAGTGACTGCGTTTTTGAGCAAGATGCAGAGTCAGGGGTTGCAGCCTAATTCAATTACTTACACAACTCTGGTCGATGTGTATGGGAAGTCCGGAAGATTTAGCGACGCTATTGAGTGCTTGGAGGTCTTGAAATCTACTGGGTTCAAGCCAACTTCAACCATGTATAATGCTCTGATCAATGCCTATGCGCAAAGGGGTTTGTCTGAACTAGCAGTAAATGCATTCAGGTTGATGACAACTGAGGGTCTGACACCTAGTCTCTTAGCTCTCAATTCATTGATCAATGCATTCGGTGAAGACAGAAGGGATGCTGAAGCCTTTGCTGTGCTGCAGTATATGAAAGAAAACAACATTGAACCTGATGTAGTTACTTATACCACACTAATGAAAGCTTTGATTCGTGTTGAAAAGTTCCAAAAGGTTCCAGCTGTGTATGAAGAAATGGTCGCATCTGGGTGCACTCCTGATCGAAAAGCTAGAGCAATGCTGCGGTCTGCTCTTAGATACATGAAGCAGACACTAAAATCATAGTTAAATTATCAAGCACATTCTTTCATGAAGACAGAACAGAATCAAATTTGCTCACCTTACATGGTTATAATTCTGAAGGTTAATGTAATAATAAAATCACGATTCCTTGTAGACTAGCATAACCCCCGCTGTCCCCTCACAGCAGGTGCTTTGGGGCAGTATGTCTGGGTCATGCCGGATATGTACGCTCCAACAGTTCCTGAATGAGAAATGAAGCTGTGGAAAATCACGACATGGAATGCATAGAAAATTTATGGCTTCCTGTAATGCTGTATCATGTATTTGTTGATCTGTCCCTCAATATATGAAATTTAAACTGATTCTCTCTTTGTGATTTATGTATCATACGTTAATGTAAGTAAAATTAATTTGTTGAAATGCATATTTTATGCACTTCATTTACATCCCCACTGCTTTGCTTC

Coding sequences of Glyma04g01980

Limit To All Plant Sequences

>Glyma04g01980.1   sequence type=CDS   gene model=Glyma04g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCTTTTACCACCACAACTAACAACAACCCCCTTCCCTTCCCCATCCACCCACCGCCACAGCCACCACAACAACATCCATTTCCTCCCGCCGCCGCAATCCTCCGCAAGCCCCATAACCGCCAAACCAACCATCCTCGAAGAAGGCCCCGACGACATCCTCTCCCTTCACAACCGCCGCTACGACTTCACCCCCCTCCTCAGCTTCCTCTCCACCACTTCCAACTCAAGCCCTCCCACCTCACTCGACTCAACCGAGTTCCAACTCGCCGAGTCCTACCGCGCCGTCCCTGCCCCACTCTGGCACGCCTTCCTCAAGTCTCTCTGCGCCTCCTCCTCCTCCTCCTCCTCCATCGCCCTCGCGTACGCCGTCGTTTCATGGCTCCAGAAACACAATCTCTGCTTCTCCTACGAGCTCCTCTACTCCATCCTCATCAACGCCCTCGGCCGCTCCGAAAAGCTCTACGAAGCCTTCCTACTCTCCCAGCGTCAGGTCCTCACTCCCCTCACCTACAACGCGCTCATCGGCGCGTGCGCCCGAAACGGCGACGTCGAGAAAGCCCTAAACCTAATGTCCAAAATGCGCCGCGACGGTTACCAGCCGGACTTCGTCAACTACAGCTCCATCATTCAGTACCTGACGCGCTCCAACAAAATCGACTCTCCAATTCTCCAGAAACTCTACGCCGAAATCGAGACCGATAAAATCGAAATCGACGGCCACCTCATGAACGACATCATTGTAGGATTCTCCAAAGCCGGCGATCCGACTCGCGCGATGCGGTTTCTAGCTATGGCTCAGAGCAACGGACTGAACCCTAAGCCCTCGACGCTTGTGGCGGTTATCTTGGCGCTTGGGAATTCGGGAAGGACGCATGAGGCTGAAGCGTTGTTTGAGGAGATTAGAGAGAACGGCTTGGAACCGAGAACTAGGGCTTATAATGCTCTGCTTAAAGGTTACGTGAGAACGGGTTCGCTTAAGGATGCGGAGTTTGTGGTCTCTGAAATGGAGAAGGCTGGGGTCAAGCCTGATGAGCAAACTTATAGTTTGTTGATTGACGTGTATGCGCACGCGGGGAGGTGGGAGAGTGCGAGGATTGTGTTGAAGGAGATGGAAGCGAGCAATGTGCAACCTAATTCTTATGTTTTTAGTAGAATCTTGGCGAATTATCGCGACAAAGGGGAGTGGCAGAAATCGTTTCAGGTTCTGAAGGATATGAAGAGCAGTGGTGTGCAGCCTGATAGGCATTTTTACAATGTGATGATTGATACGTTTGGGAAGTATAACTGCCTTGATCACGCCATGGCCACGTTTGAGAGGATGTTGTCCGAGGGGATTCCGCCGGATATCGTTACTTGGAACACGCTGATCGATTGTCATTGTAAGTCGGGACGCCACGATATGGCCGAGGAATTGTTCAGTGAAATGCAGCAGAGGGGATACTCGCCTTGCATCACTACTTATAACATTATGATTAACTCTATGGGGGAGCAGCAGAGGTGGGAGCAAGTGACTGCGTTTTTGAGCAAGATGCAGAGTCAGGGGTTGCAGCCTAATTCAATTACTTACACAACTCTGGTCGATGTGTATGGGAAGTCCGGAAGATTTAGCGACGCTATTGAGTGCTTGGAGGTCTTGAAATCTACTGGGTTCAAGCCAACTTCAACCATGTATAATGCTCTGATCAATGCCTATGCGCAAAGGGGTTTGTCTGAACTAGCAGTAAATGCATTCAGGTTGATGACAACTGAGGGTCTGACACCTAGTCTCTTAGCTCTCAATTCATTGATCAATGCATTCGGTGAAGACAGAAGGGATGCTGAAGCCTTTGCTGTGCTGCAGTATATGAAAGAAAACAACATTGAACCTGATGTAGTTACTTATACCACACTAATGAAAGCTTTGATTCGTGTTGAAAAGTTCCAAAAGGTACATAAATTAGCATTGTCACGGTCAGTTTGTCATCTATGTTTTCATGACCCTTCAGTCTTGCACTTCATCAAAGGAAATTATCATGGTTTATTTTTGCCCGCGGTACATTCTTAG

>Glyma04g01980.2   sequence type=CDS   gene model=Glyma04g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCTTTTACCACCACAACTAACAACAACCCCCTTCCCTTCCCCATCCACCCACCGCCACAGCCACCACAACAACATCCATTTCCTCCCGCCGCCGCAATCCTCCGCAAGCCCCATAACCGCCAAACCAACCATCCTCGAAGAAGGCCCCGACGACATCCTCTCCCTTCACAACCGCCGCTACGACTTCACCCCCCTCCTCAGCTTCCTCTCCACCACTTCCAACTCAAGCCCTCCCACCTCACTCGACTCAACCGAGTTCCAACTCGCCGAGTCCTACCGCGCCGTCCCTGCCCCACTCTGGCACGCCTTCCTCAAGTCTCTCTGCGCCTCCTCCTCCTCCTCCTCCTCCATCGCCCTCGCGTACGCCGTCGTTTCATGGCTCCAGAAACACAATCTCTGCTTCTCCTACGAGCTCCTCTACTCCATCCTCATCAACGCCCTCGGCCGCTCCGAAAAGCTCTACGAAGCCTTCCTACTCTCCCAGCGTCAGGTCCTCACTCCCCTCACCTACAACGCGCTCATCGGCGCGTGCGCCCGAAACGGCGACGTCGAGAAAGCCCTAAACCTAATGTCCAAAATGCGCCGCGACGGTTACCAGCCGGACTTCGTCAACTACAGCTCCATCATTCAGTACCTGACGCGCTCCAACAAAATCGACTCTCCAATTCTCCAGAAACTCTACGCCGAAATCGAGACCGATAAAATCGAAATCGACGGCCACCTCATGAACGACATCATTGTAGGATTCTCCAAAGCCGGCGATCCGACTCGCGCGATGCGGTTTCTAGCTATGGCTCAGAGCAACGGACTGAACCCTAAGCCCTCGACGCTTGTGGCGGTTATCTTGGCGCTTGGGAATTCGGGAAGGACGCATGAGGCTGAAGCGTTGTTTGAGGAGATTAGAGAGAACGGCTTGGAACCGAGAACTAGGGCTTATAATGCTCTGCTTAAAGGTTACGTGAGAACGGGTTCGCTTAAGGATGCGGAGTTTGTGGTCTCTGAAATGGAGAAGGCTGGGGTCAAGCCTGATGAGCAAACTTATAGTTTGTTGATTGACGTGTATGCGCACGCGGGGAGGTGGGAGAGTGCGAGGATTGTGTTGAAGGAGATGGAAGCGAGCAATGTGCAACCTAATTCTTATGTTTTTAGTAGAATCTTGGCGAATTATCGCGACAAAGGGGAGTGGCAGAAATCGTTTCAGGTTCTGAAGGATATGAAGAGCAGTGGTGTGCAGCCTGATAGGCATTTTTACAATGTGATGATTGATACGTTTGGGAAGTATAACTGCCTTGATCACGCCATGGCCACGTTTGAGAGGATGTTGTCCGAGGGGATTCCGCCGGATATCGTTACTTGGAACACGCTGATCGATTGTCATTGTAAGTCGGGACGCCACGATATGGCCGAGGAATTGTTCAGTGAAATGCAGCAGAGGGGATACTCGCCTTGCATCACTACTTATAACATTATGATTAACTCTATGGGGGAGCAGCAGAGGTGGGAGCAAGTGACTGCGTTTTTGAGCAAGATGCAGAGTCAGGGGTTGCAGCCTAATTCAATTACTTACACAACTCTGGTCGATGTGTATGGGAAGTCCGGAAGATTTAGCGACGCTATTGAGTGCTTGGAGGTCTTGAAATCTACTGGGTTCAAGCCAACTTCAACCATGTATAATGCTCTGATCAATGCCTATGCGCAAAGGGGTTTGTCTGAACTAGCAGTAAATGCATTCAGGTTGATGACAACTGAGGGTCTGACACCTAGTCTCTTAGCTCTCAATTCATTGATCAATGCATTCGGTGAAGACAGAAGGGATGCTGAAGCCTTTGCTGTGCTGCAGTATATGAAAGAAAACAACATTGAACCTGATGTAGTTACTTATACCACACTAATGAAAGCTTTGATTCGTGTTGAAAAGTTCCAAAAGGTTCCAGCTGTGTATGAAGAAATGGTCGCATCTGGGTGCACTCCTGATCGAAAAGCTAGAGCAATGCTGCGGTCTGCTCTTAGATACATGAAGCAGACACTAAAATCATAG

Predicted protein sequences of Glyma04g01980

Limit To All Plant Sequences

>Glyma04g01980.1   sequence type=predicted peptide   gene model=Glyma04g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLLPPQLTTTPFPSPSTHRHSHHNNIHFLPPPQSSASPITAKPTILEEGPDDILSLHNRRYDFTPLLSFLSTTSNSSPPTSLDSTEFQLAESYRAVPAPLWHAFLKSLCASSSSSSSIALAYAVVSWLQKHNLCFSYELLYSILINALGRSEKLYEAFLLSQRQVLTPLTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVHKLALSRSVCHLCFHDPSVLHFIKGNYHGLFLPAVHS*

>Glyma04g01980.2   sequence type=predicted peptide   gene model=Glyma04g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLLPPQLTTTPFPSPSTHRHSHHNNIHFLPPPQSSASPITAKPTILEEGPDDILSLHNRRYDFTPLLSFLSTTSNSSPPTSLDSTEFQLAESYRAVPAPLWHAFLKSLCASSSSSSSIALAYAVVSWLQKHNLCFSYELLYSILINALGRSEKLYEAFLLSQRQVLTPLTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCTPDRKARAMLRSALRYMKQTLKS*

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