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Report for Sequence Feature Glyma04g01971

Feature Type:gene_model
Chromosome:Gm04
Start:1348848
stop:1354839
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01971
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42320AT Annotation by Michelle Graham. TAIR10: Zn-dependent exopeptidases superfamily protein | chr5:16918651-16920845 REVERSE LENGTH=379 SoyBaseE_val: 0ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004181GO-mf Annotation by Michelle Graham. GO Molecular Function: metallocarboxypeptidase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG2650 KOG Zinc carboxypeptidase JGI ISS
PTHR11705Panther PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B JGI ISS
PTHR11705:SF3Panther gb def: Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5J14 JGI ISS
PF00246PFAM Zinc carboxypeptidase JGI ISS
UniRef100_B9R8M1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Carboxypeptidase B2, putative n=1 Tax=Ricinus communis RepID=B9R8M1_RICCO SoyBaseE_val: 0ISS
UniRef100_C6TMW8UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TMW8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g01971
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g01971 not represented in the dataset
Glyma04g01971 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01971
ParalogEvidenceComments
Glyma06g02070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01971 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g017900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01971
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g01971
>Glyma04g01971.2   sequence type=transcript   gene model=Glyma04g01971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGCAGATCACGTTTTATTTCACCGTTAAATTTAGGTTACGATTTTGTTGAAAGAATGTCAAGGGACGGTTTCTTGATTGGTAGCTTTCCTGTTTGTTTGTGGCAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGCCGCAGAAACTTGGTGATTCAAACGCGTCTATTTTGAAGCCGGATAAGTTGGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGTTGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGCAAGTGTAGACCAATTGTTTCTGCTATACCCCTCTAAAACTATGTCGTAGGTTAAATTGTATATCCATTTTTGGGGGGAAAAATTGTAAGTTAAATTGTTGTCTGTATTACTATGTAACGCGAGCCTTTTTTTTCTGAGGCTATATAATCTAATTCTTTATAGTGCCCAACTCAAGGACTGGTGGGTTGGGTTGTAAACGAATGTATAAAGGTTGTTTGTTATACCCGAACGTCAATCCTTCTCTTTTACATTAGATTCACGTACAACGTGGTCTAACGGGGTTGAGGCACAAGTAAAGAAATGCA

>Glyma04g01971.3   sequence type=transcript   gene model=Glyma04g01971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAATTCAATCCAAACACCACCTTATTTTGTCATTGGTGGAAGACAGTGGTCAGACACACTTTGATAAGCTAAATCAATAATAACGATATCAACATCAAATCAAACATTTACATAACATTATATTACCATAAAAAATGAAATGAAATTTAATCTGTTCATACTCTGTTCTGGATCTTGCCATGGCTCTTTCGATTTTTCAATTTCTTCTGTTCTCAATCAGCAATTTCTTCCTCGCTTCTTCTTTCCAAGATCTTCTTCTTCTCTCTGTTAATGCGCAATCACACAATCTCACTCAACCTTCAGTTACGCCAATCAACTTCGATCTCTACCATTCCAGTGGCAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATGTATGTTGCTTTGACTCAGCAAGGATCGCTCCATTCCATCCGAGTGTTTCCTATTCCTTTACTCTCAAGAGTTTTTTTTTTTAAATAAATGTTTTTAACTTACAATTAAGGTGAGGGGGAGTGAATGACCCTTGGCGCGCGACAATATAAAGTTATTACTAGGGGTGTGCAAAAATTAGTTCGGTAAAAAAATCGAACCGAATTGATTTCAAATTGTTTTAACCGGTTCGATTTTATATCCAAATAGTCAAACTGATTTAGAAACTAGTTCAAAATCGAACTGGTTTTAAAAAACTGATTTTGAATTGAACTAGTTCAAAATCGAACTGTTTAATCAGTTTTAACTGGTACTAAGAGTTGAACCAATTTTGAATTGGTTTTCAAACTAGTTTTTGAATTATTTTTTTCAAATGAAAAAAATATTTAAATAAAAACCAATTCGACTAACCAAACTGGTTTTGTAGAAACAATTTGATTAATCGAATTGATTTTATAAAATAGTAAA
Coding sequences of Glyma04g01971
>Glyma04g01971.1   sequence type=CDS   gene model=Glyma04g01971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTTCGATTTTTCAATTTCTTCTGTTCTCAATCAGCAATTTCTTCCTCGCTTCTTCTTTCCAAGATCTTCTTCTTCTCTCTGTTAATGCGCAATCACACAATCTCACTCAACCTTCAGTTACGCCAATCAACTTCGATCTCTACCATTCCAGTGGCAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGCCGCAGAAACTTGGTGATTCAAACGCGTCTATTTTGAAGCCGGATAAGTTGGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGTTGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGCAAGTGTAGACCAATTGTTTCTGCTATACCCCTCTAA

>Glyma04g01971.2   sequence type=CDS   gene model=Glyma04g01971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGCCGCAGAAACTTGGTGATTCAAACGCGTCTATTTTGAAGCCGGATAAGTTGGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGTTGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGCAAGTGTAGACCAATTGTTTCTGCTATACCCCTCTAA

>Glyma04g01971.3   sequence type=CDS   gene model=Glyma04g01971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTTCGATTTTTCAATTTCTTCTGTTCTCAATCAGCAATTTCTTCCTCGCTTCTTCTTTCCAAGATCTTCTTCTTCTCTCTGTTAATGCGCAATCACACAATCTCACTCAACCTTCAGTTACGCCAATCAACTTCGATCTCTACCATTCCAGTGGCAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATGTATGTTGCTTTGACTCAGCAAGGATCGCTCCATTCCATCCGAGTGTTTCCTATTCCTTTACTCTCAAGAGTTTTTTTTTTTAA
Predicted protein sequences of Glyma04g01971
>Glyma04g01971.1   sequence type=predicted peptide   gene model=Glyma04g01971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSIFQFLLFSISNFFLASSFQDLLLLSVNAQSHNLTQPSVTPINFDLYHSSGNLMEEIRALVHRHPDKLTMETIKAGNKGYGAEVSVVTYCKEKKDNDERSKLRILLSFGQHGRELITTELALRILSILSEEKFLPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPNLWVNVHSGMEALFMPYDHKNTTPDGLPLQRMKSLLEEVKHLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPTDLATYNRVLSDWSATFFTIFKLVPQKLGDSNASILKPDKLVSIDEYLDGYLMERRNRYGKKLEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVSAIPL*

>Glyma04g01971.2   sequence type=predicted peptide   gene model=Glyma04g01971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEIRALVHRHPDKLTMETIKAGNKGYGAEVSVVTYCKEKKDNDERSKLRILLSFGQHGRELITTELALRILSILSEEKFLPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPNLWVNVHSGMEALFMPYDHKNTTPDGLPLQRMKSLLEEVKHLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPTDLATYNRVLSDWSATFFTIFKLVPQKLGDSNASILKPDKLVSIDEYLDGYLMERRNRYGKKLEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVSAIPL*

>Glyma04g01971.3   sequence type=predicted peptide   gene model=Glyma04g01971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSIFQFLLFSISNFFLASSFQDLLLLSVNAQSHNLTQPSVTPINFDLYHSSGNLMEEIRALVHRHPDKLTMETIKAGNKGYGAEVSVVTYCKEKKDNDERSKLRILLSFGQHGRELITTELALRILSILSEEKFLPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPNLWVNVHSGMEALFMPYDHKNTTPDGLPLQRMKSLLEEVKHLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPTDLATYNVCCFDSARIAPFHPSVSYSFTLKSFFF*






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