Report for Sequence Feature Glyma04g01950
Feature Type: gene_model
Chromosome: Gm04
Start: 1335714
stop: 1344458
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g01950
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G03650 AT
Annotation by Michelle Graham. TAIR10: starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805
SoyBase E_val: 0 ISS
GO:0000023 GO-bp
Annotation by Michelle Graham. GO Biological Process: maltose metabolic process
SoyBase N/A ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0005982 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch metabolic process
SoyBase N/A ISS
GO:0006098 GO-bp
Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt
SoyBase N/A ISS
GO:0010021 GO-bp
Annotation by Michelle Graham. GO Biological Process: amylopectin biosynthetic process
SoyBase N/A ISS
GO:0019252 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process
SoyBase N/A ISS
GO:0019288 GO-bp
Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
SoyBase N/A ISS
GO:0019760 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process
SoyBase N/A ISS
GO:0043085 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0003844 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 1,4-alpha-glucan branching enzyme activity
SoyBase N/A ISS
GO:0004553 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds
SoyBase N/A ISS
GO:0043169 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cation binding
SoyBase N/A ISS
KOG0470
KOG
1,4-alpha-glucan branching enzyme/starch branching enzyme II
JGI ISS
PTHR10357 Panther
AMYLASE
JGI ISS
PTHR10357:SF27 Panther
LYSOSOMAL ALPHA-GLUCOSIDASE
JGI ISS
PF00128 PFAM
Alpha amylase, catalytic domain
JGI ISS
PF02806 PFAM
Alpha amylase, C-terminal all-beta domain
JGI ISS
PF02922 PFAM
Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
JGI ISS
UniRef100_F9W2W3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Alpha-amylase n=1 Tax=Glycine max RepID=F9W2W3_SOYBN
SoyBase E_val: 0 ISS
UniRef100_UPI000233A805 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A805 related cluster n=1 Tax=unknown RepID=UPI000233A805
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g01950
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g01950
Paralog Evidence Comments
Glyma06g02051 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g01950 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g017700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g01950
Coding sequences of Glyma04g01950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g01950.2 sequence type=CDS gene model=Glyma04g01950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTAACTGTTTGGGCCTTTATCCTCTTATTTCTGCCCCTTCAACCATTGCCTGCACCACTCACATTGTGAGAAGTAAGCAGTATCTTGCGACACAAAAGCCAGTAAATCTGGCTCTCGGCTATCGGAATCCACATGGATATGGGTTCAGTTTTGGATCGAGAAGATCAATACACGAGAGGGTGAGCTCTCATTTCAAGGGCATAGCTGTTATGACAGATGACAAATCAACAATGTCATCCACCGAGGAAGACTTAGAAAACATTGGCATCTTTCATATTGATCCATCCCTAAAGCCATATAAAGATCACTTCAAATATAGACTGAAGAGATATGTAGATCAGAAAAAGCTTATTGAAGAATATGAAGGAGGTCTTGAAGAATTTTCTCAAGGTTATTTGAAATTTGGATTTAACAGAGAAGAAGGTGGTATTGTTTACTGTGAGTGGGCACCTGCTGCACAGGAAGCACAAATTATTGGAGACTTTAATGGATGGGATGGTTCCAACCACCAGATGGAAAAAAATCAGTTTGGTGTTTGGAGTATTAGGATCCCTGATACTGATGGAAATTCTGCCATACCACACAATTCAAGAGTGAAGTTTAGATTTAGACACGGGGATGGAGTTTGGGTTGATCGCATCCCTGCTTGGATCAAATATGCCACTGTTGATCCTACCAGATTTGCCGCACCATATGATGGTGTCTACTGGGATCCACCACTTTCAGAGAGGTATCAGTTTAAATATCCTCGTCCACCAAAGCCAAAGGCCCCGCGGATATATGAGGCTCATGTGGGGATGAGTAGCTTTGAACCCCGCATAAACTCTTACAGGGAATTTGCAGATGAGATTTTGCCCCGTATTCGGGCAAATAACTATAATACAGTCCAGCTGATGGCTGTGATGGAGCATTCTTATTATGCATCATTTGGATATCATGTAACAAATTTTTTCGCTGTGAGCAGTAGATCTGGAACCCCTGAAGATCTTAAATATCTGATAGATAAGGCCCATAGCCTAGGTTTGCAGGTTTTGATGGATGTTATCCATAGTCATGCTAGTAATAATGTTACTGATGGACTCAATGGCTTTGATGTTGGCCAAACCTCACAAGATTCTTACTTCCATACTGGAGATAGAGGCTATCATAAATTGTGGGACAGTAGACTCTTCAACTATGCTAACTGGGAAGTTCTTCGTTTCCTTTTATCAAATTTAAGGTGGTGGCTTGAAGAGTTTAAATTTGATGGATTTCGATTTGATGGAGTAACATCAATGCTGTATCATCACCATGGAATCAACATTGCATTTACAGGGGATTATAATGAATATTTTAGTGAAGCAACAGATGTGGATGCTGTTGTCTATCTGATGCTGGCTAATTGTCTGATCCATAGTATTTTGCCAGATGCAACTGTCATTGCTGAAGATGTTTCTGGCATGCCTGGACTTGGTCAACCAGTTTCTGATGGTGGAATTGGTTTTGACTATCGTCTAGCCATGGCAATCCCTGATAAATGGATTGATTACTTGAAGAACAAGAACGACTATGCATGGTCAATGAAGGAAATCTCTTGGAGTTTGACAAATAGGAGATACACTGAGAAATGTGTTTCCTATGCTGAAAGCCATGATCAGGCCATTGTTGGAGACAAGACTGTTGCATTTCTCCTAATGGATGAAGAAATGTATTCTGGCATGTCTAGCTTGGTTGATGCTTCTCCTATTGTTGAGAGAGGGATTGCTCTTCAGAAGATGATACACTTCATAACAATGGCATTAGGTGGAGAGGGCTACCTTAATTTCATGGGCAATGAGTTTGGCCATCCAGAGTGGATTGATTTCCCAAGAGAAGGCAATGGATGGAGTTATGAGAAGTGCAGGCGTCAGTGGAATCTGGTGGATACAGATCACTTGAGATATAAGTTCATGAATGCATTTGACAGAGCAATGAACTTGCTTGATGATAAATTCTCATTCCTTGCATCAACAAAACAGATTGTGAGCAGTGCAGATGATGATGACAAGGTTATAGTCTTTGAGCGAGGAGATCTGATATTTGTATTCAATTTTCATCCAGAGAATACATATGAAGGGTATAAAGTTGGATGTGACTTACCTGGAAAGTATAGAGTTGCATTGGATAGTGATGCTTGGGAATTTGGAGGACGTGGAAGAGTGGGGCATGATGTAGACCACTTCACATCCCCAGAAGGCATACCAGGAGTCCCTGAAACAAATTTTAATAATCGCCCCAATTCATTCAAGGTCCTCTCCCCTGCTCGTACTTGTGTGGCATATTATAGAGTGGAAGAAAGTCAAGAAGACGACGATAATAACAGTTTGGTTGGGGTAGAAGAGACTTCTGCTGCAGCAGATGTTGCAAAAATTCCTGATGAATCCGCTTCTACAGAAAGTGAAGATATCAAATTGGATGGGGTGAAAGAGACATTAGCTGCAGCAGATGTTGCAAAAATTCCTGATGAATCTGCCCCTTTAGAAAGTGAAGATAGCAATTTGGATGTGGTGAAAGAGCCGTTAGCTGCAGCAAATGCTGAAGTTACAAAAATTTCTGGTGAATTGGTTTCTGTAGAAACTGAAGGTATCAATTTGGATAAGTTGGAAGAGACAATAGTAGCAGCTTCTGTTGAAAGTGAGGTAGTTCGAGACAAACCAGAAGATGCAGCCAACTGA
Predicted protein sequences of Glyma04g01950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g01950.2 sequence type=predicted peptide gene model=Glyma04g01950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MINCLGLYPLISAPSTIACTTHIVRSKQYLATQKPVNLALGYRNPHGYGFSFGSRRSIHERVSSHFKGIAVMTDDKSTMSSTEEDLENIGIFHIDPSLKPYKDHFKYRLKRYVDQKKLIEEYEGGLEEFSQGYLKFGFNREEGGIVYCEWAPAAQEAQIIGDFNGWDGSNHQMEKNQFGVWSIRIPDTDGNSAIPHNSRVKFRFRHGDGVWVDRIPAWIKYATVDPTRFAAPYDGVYWDPPLSERYQFKYPRPPKPKAPRIYEAHVGMSSFEPRINSYREFADEILPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLQVLMDVIHSHASNNVTDGLNGFDVGQTSQDSYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWLEEFKFDGFRFDGVTSMLYHHHGINIAFTGDYNEYFSEATDVDAVVYLMLANCLIHSILPDATVIAEDVSGMPGLGQPVSDGGIGFDYRLAMAIPDKWIDYLKNKNDYAWSMKEISWSLTNRRYTEKCVSYAESHDQAIVGDKTVAFLLMDEEMYSGMSSLVDASPIVERGIALQKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYEKCRRQWNLVDTDHLRYKFMNAFDRAMNLLDDKFSFLASTKQIVSSADDDDKVIVFERGDLIFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWEFGGRGRVGHDVDHFTSPEGIPGVPETNFNNRPNSFKVLSPARTCVAYYRVEESQEDDDNNSLVGVEETSAAADVAKIPDESASTESEDIKLDGVKETLAAADVAKIPDESAPLESEDSNLDVVKEPLAAANAEVTKISGELVSVETEGINLDKLEETIVAASVESEVVRDKPEDAAN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
