Glyma04g01890 - SoyBase

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Report for Sequence Feature Glyma04g01890

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1267776
stop:	1273139
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76360	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:28643242-28646483 REVERSE LENGTH=484	SoyBase	E_val: 5.00E-159	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF531	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B9R8N8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase cx32, putative n=1 Tax=Ricinus communis RepID=B9R8N8_RICCO	SoyBase	E_val: 4.00E-172	ISS
UniRef100_UPI000233A812	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A812 related cluster n=1 Tax=unknown RepID=UPI000233A812	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01890

Paralog	Evidence	Comments
Glyma06g02010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g017200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01890

Limit To All Plant Sequences

>Glyma04g01890.2   sequence type=CDS   gene model=Glyma04g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAACTGTTTCAGAAAGACAGCAGCTGATGACAACAAGATTCACAAGAATGAGTATAAGACTCCCACCACCAATAATCCACGCCCTTCTCCCCCAGAGAGATTGGTGAAGGAAACAGTGGAAGAAAGAGGTGAGCGTCCACAAAACAACAGCGTTCCAAAGCTTATAAAGTACACGTTGGATGAGTTGAGAAGTGCGACCAGAAACTTCAGACCAGACACGGTCCTAGGCGAGGGTGGTTTTGGACGTGTTTTCAAAGGGTGGATTGATAAGAACACCTTCAAGCCCTCAAGAGTTGGTGTTGGAATCCCCGTGGCTGTGAAGAAGTCTAACCCCGATAGCCTCCAGGGTCTAGAAGAATGGCAGAGTGAAGTGCAACTTTTGGGGAAATTCTCTCATCCAAACCTGGTTAAACTAATTGGCTATTGCTGGGAGGAAAGTCAATTCCTGCTCGTATACGAATACATGCAAAAGGGCAGCCTCGAAAGCCACCTCTTTAGAAGAGGCCCAAAACCACTTTCATGGGATATAAGACTCAAGATAGCCATAGGAGCTGCCAGAGGTCTAGCTTTCTTGCATACATCGGAAAAGTCTGTCATCTATAGAGACTTCAAGTCTTCCAACATTTTGCTTGATGGGGATTTTAATGCAAAACTATCGGACTTTGGATTGGCAAAGTTTGGCCCTGTCAACGGAAAATCCCACGTAACCACGCGGATCATGGGCACGTATGGTTACGCGGCCCCTGAATACATGGCCACAGGCCATCTGTATATTAAAAGCGATGTATATGGATTTGGCGTTGTTCTGCTAGAAATGCTAACAGGTAGAGCAGCTCTAGACACAAATCAGCCAACGGGTATGCAGAATTTGGTAGAGTGCACTATGTCATCTCTACATGCCAAAAAGAGACTGAAAGAGGTAATGGATCCAAACATGGAGGAACAATATTCATTAAGGGCAGCATTTCAAATAGCGCAACTTATTTTGAAATGTTTAGAATCTAAGCCAAAGAAACGACCGTCTATGGAGGAGGTTTTGGAAACCTTAGAAAAAGTTGAAGCCATAAAATACAAACCCAAAGTGAAGAAAAGAAGTGCGGTTCGTTAG

Predicted protein sequences of Glyma04g01890

Limit To All Plant Sequences

>Glyma04g01890.2   sequence type=predicted peptide   gene model=Glyma04g01890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCFRKTAADDNKIHKNEYKTPTTNNPRPSPPERLVKETVEERGERPQNNSVPKLIKYTLDELRSATRNFRPDTVLGEGGFGRVFKGWIDKNTFKPSRVGVGIPVAVKKSNPDSLQGLEEWQSEVQLLGKFSHPNLVKLIGYCWEESQFLLVYEYMQKGSLESHLFRRGPKPLSWDIRLKIAIGAARGLAFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKFGPVNGKSHVTTRIMGTYGYAAPEYMATGHLYIKSDVYGFGVVLLEMLTGRAALDTNQPTGMQNLVECTMSSLHAKKRLKEVMDPNMEEQYSLRAAFQIAQLILKCLESKPKKRPSMEEVLETLEKVEAIKYKPKVKKRSAVR*

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