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Report for Sequence Feature Glyma04g01881

Feature Type:gene_model
Chromosome:Gm04
Start:1260395
stop:1261636
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01881
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26770AT Annotation by Michelle Graham. TAIR10: plectin-related | chr2:11404257-11407743 REVERSE LENGTH=496 SoyBaseE_val: 3.00E-43ISS
GO:0007015GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament organization SoyBaseN/AISS
GO:0010119GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement SoyBaseN/AISS
GO:0032880GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein localization SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003779GO-mf Annotation by Michelle Graham. GO Molecular Function: actin binding SoyBaseN/AISS
PTHR26369Panther FAMILY NOT NAMED JGI ISS
PTHR26369:SF18Panther JGI ISS
UniRef100_B9SB74UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SB74_RICCO SoyBaseE_val: 6.00E-44ISS
UniRef100_UPI000233A811UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A811 related cluster n=1 Tax=unknown RepID=UPI000233A811 SoyBaseE_val: 2.00E-69ISS

Expression Patterns of Glyma04g01881
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g01881 not represented in the dataset
Glyma04g01881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g01881 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g017100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01881
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g01881
>Glyma04g01881.2   sequence type=transcript   gene model=Glyma04g01881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTGCTTTTCCCTATTGCTCCAACTCAGAAAAAAAAAAAAAGAAAGAAAAGAAAATGTGATAAGAAGCAGGATTAGGGTTTAGTTTCATTGTTACAAGCTGTCAGATTTTGCTTTTGATTTGAACTAGAGGTTATAGTTCGTGAAAATGACGAGGATGACCCGTGATTTTGGGGATACTATGCAAAAAGATGCAGTGCCGGCGGTGTCGGCTGATATAATATTTGCTTCTCTTCGGTTTCCTAATTACAAAATCGGAGTTAACAATCAGATCATGGAGACAAAGGATAGTCCAAAAGTGCTATCTATGAAGGAGGTTGTTGCGCGAGAGACTGCACAGCTGTTGGACCAGCAGAAACGTCTGTCGGTTCGCGATCTTGCCAGTAAATTTGAGAAGGGTTTGGCAGCTGCAGGGGAGGGAAGAGCAACAGTGAAAGGGAAAATGGGTTTACTTCATTTTTGA
Coding sequences of Glyma04g01881
>Glyma04g01881.1   sequence type=CDS   gene model=Glyma04g01881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAGGATGACCCGTGATTTTGGGGATACTATGCAAAAAGATGCAGTGCCGGCGGTGTCGGCTGATATAATATTTGCTTCTCTTCGGTTTCCTAATTACAAAATCGGAGTTAACAATCAGATCATGGAGACAAAGGATAGTCCAAAAGTGCTATCTATGAAGGAGGTTGTTGCGCGAGAGACTGCACAGCTGTTGGACCAGCAGAAACGTCTGTCGGTTCGCGATCTTGCCAGTAAATTTGAGAAGGGTTTGGCAGCTGCAGGGGAGGGAAGAGCAACAGTGAAAGGGAAAATGGGTTTACTTCATTTTTGA

>Glyma04g01881.2   sequence type=CDS   gene model=Glyma04g01881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAGGATGACCCGTGATTTTGGGGATACTATGCAAAAAGATGCAGTGCCGGCGGTGTCGGCTGATATAATATTTGCTTCTCTTCGGTTTCCTAATTACAAAATCGGAGTTAACAATCAGATCATGGAGACAAAGGATAGTCCAAAAGTGCTATCTATGAAGGAGGTTGTTGCGCGAGAGACTGCACAGCTGTTGGACCAGCAGAAACGTCTGTCGGTTCGCGATCTTGCCAGTAAATTTGAGAAGGGTTTGGCAGCTGCAGGGGAGGGAAGAGCAACAGTGAAAGGGAAAATGGGTTTACTTCATTTTTGA
Predicted protein sequences of Glyma04g01881
>Glyma04g01881.1   sequence type=predicted peptide   gene model=Glyma04g01881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRMTRDFGDTMQKDAVPAVSADIIFASLRFPNYKIGVNNQIMETKDSPKVLSMKEVVARETAQLLDQQKRLSVRDLASKFEKGLAAAGEGRATVKGKMGLLHF*

>Glyma04g01881.2   sequence type=predicted peptide   gene model=Glyma04g01881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRMTRDFGDTMQKDAVPAVSADIIFASLRFPNYKIGVNNQIMETKDSPKVLSMKEVVARETAQLLDQQKRLSVRDLASKFEKGLAAAGEGRATVKGKMGLLHF*






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