Glyma04g01800 - SoyBase

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Report for Sequence Feature Glyma04g01800

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1199767
stop:	1202787
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42350	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr5:16932106-16933797 FORWARD LENGTH=563	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24413	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24413:SF213	Panther		JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_G7J5X9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7J5X9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JST5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JST5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01800

Paralog	Evidence	Comments
Glyma06g01910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g016300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01800

Limit To All Plant Sequences

>Glyma04g01800.2   sequence type=transcript   gene model=Glyma04g01800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCTTTACTAAATTCCCGTCCCTACCAATCAAGCCACAAAATTGTTGTTTACTGCTCAATTTTTTTGTTTGTATTTTTTATTTATTTATTTCTTTTCCAATCGGAGGAGCCATAAAATGAAAAAAGTAAAGTTTTGGTAGGTATAAGATGAGCATTTCTAATGGAGCAAGAAATTGGTGATTCATTTTTCTTTGTGAATTGCATTGCAATGATCTGGGTTCATTGATTGGCTTTGCGAGGAGAGCTTGGGTGCTACTCTGAACGCAAATTTTCAAGATAGCTATGGGTGTTGTATATTTTTTTGTGAAGAAGAATTAGTGAGCATAATGTTTTCTGAAAGATTGGGGGCAGACGAATCTCATTGTCAAGATTTACAGAGTTTGAGTGTGTCAAAGCGACTTGTGAGGAGTGTTAGCCAGAAGTGGAGGAAGAAGAGTAACAGGAATTCTGGGGAAGAAGCTGACGATGTAAATGGAGTTTCTTTAAGATGCTTAAATCTGTATGGACGAGGTGGGGGCTGCAAGGTAGGTGCTGACACTGGTGATGATTTTGGCGATTCAAGCAGTAGAAGGAGATCTAGTGCCAGTGACGAAGGAAAGGGATATAAGCCGATTTGTGGCCCAGAAGAAACTGCTGTGGATTGCTTTTCATATGGGGTGAAGGACAGGTTCTGGAGGAGACACAACCGAAAGAATTCTGAGCTTGAAGAATTGTTTACAAACAATAGAATGCATATTTTTCTTCCTGATGATATTCTTGAAATGTGTTTGGTTAGGCTTCCACTGACAAGTCTCATGAATGCCCGTCTTGTGTGTAAAAAATGGAGGTCGTTGACCACCACGCCTAGGTTCCTCCATATGAGAAGGGAGGGTTCATATCAAAGTCCATGGTTGTTTCTGTTCGGGGTTGTTAAAGATGGATTTTGTTCTGGTGAGATACATGCGCTGGATGTGTCTCTGAATCAATGGCACAGGATAGATGCTCATTTTCTCAGAGGAAGGTTCTTGTTCTCTGTTGCTGGTATACAGGATGATATCTTCATTGTTGGAGGATGTTCGAGCTTGACTAACTTTGGGAAAGTGGATAGGAGCTCATTCAAAACACACAAAGGGGTGCTTGCATTTAGCCCCTTGACAAAATCTTGGCGTAAAATGCCATCCATGAAATATGCTAGATCAAATCCTATATTAGGAATCTCTGAGGTCAGCTTGGATTTTCCAACTTGTCAAAGTCATCAAAGTCGGCAGGATAGACGTTTTCCAAGATCAAGGATTGGTGGGGTTTCAGACGTCTATGAGGATCCTCACAAGCTTTCAATGAGACGTCATTGCAAACCTGCTTTTAATGAGACTGAAGCTTCATCTTTGCCCAGTCGAAAGGCATACAAATTTCTTAGACAAAAAAGTGACCATTCAAGCTCAAAGGGCAGTAAAAGATTTTTGTTGATAGCTGTAGGAGGTCTGGGGTCTTGGGATGAGCCTCTGGACGCTGGGGAAATATATGATTCTGTGTCAAATAAATGGACTGAAATCCCAAGATTACCTTTTGATTTTGGGGTTGCTCGTTCTGGAATTGTTTGTGGCAGGATGTTTTATGTTTATTCTGAAACAGACAAGCTTGCAGCATATGACATAGAACGGGGTTTCTGGATTGCAATTCAAGCCACTCCAATCCCACCTCGTGTACATGGGTACTACCCCAAACTTGTATCTTCTGATGGCCGCCTTTTCATGCTCTCAGTGTCCTGGTGTGAAGGGGATGGTCAGATTGGGAGACGAAACAAGGCTGTTAGAAAATTATGGGAGTTGGATCTCATGTATCTTACCTGGACTGAAGCCTCAGTGCATCCGGATGCCCCAATGGACTGGAACGCTGTTTTTGTGTCAGATAAAAGCCTGATTTTTGGGGTGGAGATGTTCAAAATAATTGGCCGGGTATTGGGTTTTTTCACCGTTTGTGATGTGTCTGATATGGCAAACTGGAACCATATTTCAAGGGATCATGTTACTCATGAGCTGGACGTTTCTTCGTGCTTGACCAAATCTGTGGCAGTGTTACACCTTTGAAATCCTTTGTGCGTGTATGCTAAACAACAGAATCTTAGGTCTTCCCTCTATGTTTTGAGGTACAACATGACCGGTAAGTCCTGCTGTATATTTGCTGCATATAATTGTAATGGGCAAATCTTCTGAACACGATTCTCAGTTTCTGTGCTTCTCATGTACCTTTTATTTAATTCATTTCTCACCAATCATAAAAGTTGAATTCCACACCGACTTTGCACTTATATTAGGTTTTTGTATTATAACTAGTAGCACTAATCAGCCTCCTTGTGTATTTGGCATATGGCTATACGTGTATGCAATACAAGTGACATTGTCTCAATTCTGAAGAAGACACTCCCAGAGGCAGGGAATTGGCTCAATGAAAACGAGTATATAATGTGTGATTAGGTGCATTTTGCACCCTTAATCTTGTTTTCCGGAAAAGTTGCTAGAGATTTTCTTGTGAATCTGTGCATCTACCATTATTTGCATGTGACCATTTAACTGTTAAGTTTATTCTTGTTTATCCCTTTTTAACCGAATGAAAAGAGGCTTATTTTACTTGTATTGGAATTTTAGTTCTTTTTTCATTAGAAGAATAAAAGTCACAAAAATCAAAATTTTAATTA

Coding sequences of Glyma04g01800

Limit To All Plant Sequences

>Glyma04g01800.1   sequence type=CDS   gene model=Glyma04g01800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTGAAAGATTGGGGGCAGACGAATCTCATTGTCAAGATTTACAGAGTTTGAGTGTGTCAAAGCGACTTGTGAGGAGTGTTAGCCAGAAGTGGAGGAAGAAGAGTAACAGGAATTCTGGGGAAGAAGCTGACGATGTAAATGGAGTTTCTTTAAGATGCTTAAATCTGTATGGACGAGGTGGGGGCTGCAAGGTAGGTGCTGACACTGGTGATGATTTTGGCGATTCAAGCAGTAGAAGGAGATCTAGTGCCAGTGACGAAGGAAAGGGATATAAGCCGATTTGTGGCCCAGAAGAAACTGCTGTGGATTGCTTTTCATATGGGGTGAAGGACAGGTTCTGGAGGAGACACAACCGAAAGAATTCTGAGCTTGAAGAATTGTTTACAAACAATAGAATGCATATTTTTCTTCCTGATGATATTCTTGAAATGTGTTTGGTTAGGCTTCCACTGACAAGTCTCATGAATGCCCGTCTTGTGTGTAAAAAATGGAGGTCGTTGACCACCACGCCTAGGTTCCTCCATATGAGAAGGGAGGGTTCATATCAAAGTCCATGGTTGTTTCTGTTCGGGGTTGTTAAAGATGGATTTTGTTCTGGTGAGATACATGCGCTGGATGTGTCTCTGAATCAATGGCACAGGATAGATGCTCATTTTCTCAGAGGAAGGTTCTTGTTCTCTGTTGCTGGTATACAGGATGATATCTTCATTGTTGGAGGATGTTCGAGCTTGACTAACTTTGGGAAAGTGGATAGGAGCTCATTCAAAACACACAAAGGGGTGCTTGCATTTAGCCCCTTGACAAAATCTTGGCGTAAAATGCCATCCATGAAATATGCTAGATCAAATCCTATATTAGGAATCTCTGAGGTCAGCTTGGATTTTCCAACTTGTCAAAGTCATCAAAGTCGGCAGGATAGACGTTTTCCAAGATCAAGGATTGGTGGGGTTTCAGACGTCTATGAGGATCCTCACAAGCTTTCAATGAGACGTCATTGCAAACCTGCTTTTAATGAGACTGAAGCTTCATCTTTGCCCAGTCGAAAGGCATACAAATTTCTTAGACAAAAAAGTGACCATTCAAGCTCAAAGGGCAGTAAAAGATTTTTGTTGATAGCTGTAGGAGGTCTGGGGTCTTGGGATGAGCCTCTGGACGCTGGGGAAATATATGATTCTGTGTCAAATAAATGGACTGAAATCCCAAGATTACCTTTTGATTTTGGGGTTGCTCGTTCTGGAATTGTTTGTGGCAGGATGTTTTATGTTTATTCTGAAACAGACAAGCTTGCAGCATATGACATAGAACGGGGTTTCTGGATTGCAATTCAAGCCACTCCAATCCCACCTCGTGTACATGGGTACTACCCCAAACTTGTATCTTCTGATGGCCGCCTTTTCATGCTCTCAGTGTCCTGGTGTGAAGGGGATGGTCAGATTGGGAGACGAAACAAGGCTGTTAGAAAATTATGGGAGTTGGATCTCATGTATCTTACCTGGACTGAAGCCTCAGTGCATCCGGATGCCCCAATGGACTGGAACGCTGTTTTTGTGTCAGATAAAAGCCTGATTTTTGGGGTGGAGATGTTCAAAATAATTGGCCGGGTATTGGGTTTTTTCACCGTTTGTGATGTGTCTGATATGGCAAACTGGAACCATATTTCAAGGGATCATGTTACTCATGAGCTGGACGTTTCTTCGTGCTTGACCAAATCTGTGGCAGTGTTACACCTTTGA

>Glyma04g01800.2   sequence type=CDS   gene model=Glyma04g01800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTGAAAGATTGGGGGCAGACGAATCTCATTGTCAAGATTTACAGAGTTTGAGTGTGTCAAAGCGACTTGTGAGGAGTGTTAGCCAGAAGTGGAGGAAGAAGAGTAACAGGAATTCTGGGGAAGAAGCTGACGATGTAAATGGAGTTTCTTTAAGATGCTTAAATCTGTATGGACGAGGTGGGGGCTGCAAGGTAGGTGCTGACACTGGTGATGATTTTGGCGATTCAAGCAGTAGAAGGAGATCTAGTGCCAGTGACGAAGGAAAGGGATATAAGCCGATTTGTGGCCCAGAAGAAACTGCTGTGGATTGCTTTTCATATGGGGTGAAGGACAGGTTCTGGAGGAGACACAACCGAAAGAATTCTGAGCTTGAAGAATTGTTTACAAACAATAGAATGCATATTTTTCTTCCTGATGATATTCTTGAAATGTGTTTGGTTAGGCTTCCACTGACAAGTCTCATGAATGCCCGTCTTGTGTGTAAAAAATGGAGGTCGTTGACCACCACGCCTAGGTTCCTCCATATGAGAAGGGAGGGTTCATATCAAAGTCCATGGTTGTTTCTGTTCGGGGTTGTTAAAGATGGATTTTGTTCTGGTGAGATACATGCGCTGGATGTGTCTCTGAATCAATGGCACAGGATAGATGCTCATTTTCTCAGAGGAAGGTTCTTGTTCTCTGTTGCTGGTATACAGGATGATATCTTCATTGTTGGAGGATGTTCGAGCTTGACTAACTTTGGGAAAGTGGATAGGAGCTCATTCAAAACACACAAAGGGGTGCTTGCATTTAGCCCCTTGACAAAATCTTGGCGTAAAATGCCATCCATGAAATATGCTAGATCAAATCCTATATTAGGAATCTCTGAGGTCAGCTTGGATTTTCCAACTTGTCAAAGTCATCAAAGTCGGCAGGATAGACGTTTTCCAAGATCAAGGATTGGTGGGGTTTCAGACGTCTATGAGGATCCTCACAAGCTTTCAATGAGACGTCATTGCAAACCTGCTTTTAATGAGACTGAAGCTTCATCTTTGCCCAGTCGAAAGGCATACAAATTTCTTAGACAAAAAAGTGACCATTCAAGCTCAAAGGGCAGTAAAAGATTTTTGTTGATAGCTGTAGGAGGTCTGGGGTCTTGGGATGAGCCTCTGGACGCTGGGGAAATATATGATTCTGTGTCAAATAAATGGACTGAAATCCCAAGATTACCTTTTGATTTTGGGGTTGCTCGTTCTGGAATTGTTTGTGGCAGGATGTTTTATGTTTATTCTGAAACAGACAAGCTTGCAGCATATGACATAGAACGGGGTTTCTGGATTGCAATTCAAGCCACTCCAATCCCACCTCGTGTACATGGGTACTACCCCAAACTTGTATCTTCTGATGGCCGCCTTTTCATGCTCTCAGTGTCCTGGTGTGAAGGGGATGGTCAGATTGGGAGACGAAACAAGGCTGTTAGAAAATTATGGGAGTTGGATCTCATGTATCTTACCTGGACTGAAGCCTCAGTGCATCCGGATGCCCCAATGGACTGGAACGCTGTTTTTGTGTCAGATAAAAGCCTGATTTTTGGGGTGGAGATGTTCAAAATAATTGGCCGGGTATTGGGTTTTTTCACCGTTTGTGATGTGTCTGATATGGCAAACTGGAACCATATTTCAAGGGATCATGTTACTCATGAGCTGGACGTTTCTTCGTGCTTGACCAAATCTGTGGCAGTGTTACACCTTTGA

Predicted protein sequences of Glyma04g01800

Limit To All Plant Sequences

>Glyma04g01800.1   sequence type=predicted peptide   gene model=Glyma04g01800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSERLGADESHCQDLQSLSVSKRLVRSVSQKWRKKSNRNSGEEADDVNGVSLRCLNLYGRGGGCKVGADTGDDFGDSSSRRRSSASDEGKGYKPICGPEETAVDCFSYGVKDRFWRRHNRKNSELEELFTNNRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRSLTTTPRFLHMRREGSYQSPWLFLFGVVKDGFCSGEIHALDVSLNQWHRIDAHFLRGRFLFSVAGIQDDIFIVGGCSSLTNFGKVDRSSFKTHKGVLAFSPLTKSWRKMPSMKYARSNPILGISEVSLDFPTCQSHQSRQDRRFPRSRIGGVSDVYEDPHKLSMRRHCKPAFNETEASSLPSRKAYKFLRQKSDHSSSKGSKRFLLIAVGGLGSWDEPLDAGEIYDSVSNKWTEIPRLPFDFGVARSGIVCGRMFYVYSETDKLAAYDIERGFWIAIQATPIPPRVHGYYPKLVSSDGRLFMLSVSWCEGDGQIGRRNKAVRKLWELDLMYLTWTEASVHPDAPMDWNAVFVSDKSLIFGVEMFKIIGRVLGFFTVCDVSDMANWNHISRDHVTHELDVSSCLTKSVAVLHL*

>Glyma04g01800.2   sequence type=predicted peptide   gene model=Glyma04g01800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSERLGADESHCQDLQSLSVSKRLVRSVSQKWRKKSNRNSGEEADDVNGVSLRCLNLYGRGGGCKVGADTGDDFGDSSSRRRSSASDEGKGYKPICGPEETAVDCFSYGVKDRFWRRHNRKNSELEELFTNNRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRSLTTTPRFLHMRREGSYQSPWLFLFGVVKDGFCSGEIHALDVSLNQWHRIDAHFLRGRFLFSVAGIQDDIFIVGGCSSLTNFGKVDRSSFKTHKGVLAFSPLTKSWRKMPSMKYARSNPILGISEVSLDFPTCQSHQSRQDRRFPRSRIGGVSDVYEDPHKLSMRRHCKPAFNETEASSLPSRKAYKFLRQKSDHSSSKGSKRFLLIAVGGLGSWDEPLDAGEIYDSVSNKWTEIPRLPFDFGVARSGIVCGRMFYVYSETDKLAAYDIERGFWIAIQATPIPPRVHGYYPKLVSSDGRLFMLSVSWCEGDGQIGRRNKAVRKLWELDLMYLTWTEASVHPDAPMDWNAVFVSDKSLIFGVEMFKIIGRVLGFFTVCDVSDMANWNHISRDHVTHELDVSSCLTKSVAVLHL*

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