SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G42480 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:15936297-15938692 FORWARD LENGTH | SoyBase | E_val: 2.00E-44 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR13341 | Panther | MIR-INTERACTING SAPOSIN-LIKE PROTEIN | JGI | ISS | |
| PTHR13341:SF2 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF11938 | PFAM | Protein of unknown function (DUF3456) | JGI | ISS | |
| UniRef100_G7J5Y0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Canopy-like protein n=1 Tax=Medicago truncatula RepID=G7J5Y0_MEDTR | SoyBase | E_val: 6.00E-61 | ISS |
| UniRef100_I1K7B2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7B2_SOYBN | SoyBase | E_val: 4.00E-81 | ISS |
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Glyma04g01785 not represented in the dataset |
Glyma04g01785 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g01880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g01785.1 sequence type=CDS gene model=Glyma04g01785 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGTAATTTACGTCGCTCATACCTGTACGATAAATGCTAACATGTGTTTTGCAGTAATTCACGTTTCTCATTTCTTTTTGATGCACAACATGGAGAGGCCACGGAATCACTTGGATATGCATTCAAAATTATGTAATCGAATGGGAAGATACTATGTTCCCTTCAATTGGACGGTGGTTAGCGAACTAAGAGTCGTTGAACTTCTTGATGGCCTTTGCGAAAAGATGCAAGATTATACACTCAAGATAGATACAAATACCTATGAATGGTTCAAAGTGGATAGCTGGGATAACCTCACAACAAATAAGCAAGAAGCTCGGGCATATTCAAAAGATATATCTTCTTATTGTGGAAGGTTACTTGAAGAAACAGAGGATGAGTTGGCTGAATTGATCAAAAAAGGATCTGTAAAAGTGGGAGGTGTGAGCAAAGTTCTTTGTCAAGATTTGAGCAAACATTGCAGTCAAATGAGTGTATCATATGCAGCAGAGGTTGATGAGGATGGACATGATGGAGAGCTCTAA
>Glyma04g01785.1 sequence type=predicted peptide gene model=Glyma04g01785 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVIYVAHTCTINANMCFAVIHVSHFFLMHNMERPRNHLDMHSKLCNRMGRYYVPFNWTVVSELRVVELLDGLCEKMQDYTLKIDTNTYEWFKVDSWDNLTTNKQEARAYSKDISSYCGRLLEETEDELAELIKKGSVKVGGVSKVLCQDLSKHCSQMSVSYAAEVDEDGHDGEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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