Glyma04g01770 - SoyBase

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Report for Sequence Feature Glyma04g01770

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1183598
stop:	1186167
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33700	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr2:14254200-14255784 FORWARD LENGTH=380	SoyBase	E_val: 4.00E-153	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0061416	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter in response to salt stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF92	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9R8Q9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9R8Q9_RICCO	SoyBase	E_val: 2.00E-176	ISS
UniRef100_UPI000233A51C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A51C related cluster n=1 Tax=unknown RepID=UPI000233A51C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01770

Paralog	Evidence	Comments
Glyma06g01870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g016100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01770

Limit To All Plant Sequences

>Glyma04g01770.2   sequence type=CDS   gene model=Glyma04g01770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGTGGGAATGGATTTTCCTCCTCCGTTTACTATGTTAGAGGCCAAAGACAGTGCATTTGTGGTGGATGATCAGAAATCAGGGGATTTGAATGATATAAAACCGATGACTAAGGGTAAGCCTCCACGCCATGCTTCGACTTTGAGGCACAGCATTAGCAACACCAGATTGCTGGCCATATCAGATTTGAGTTTGGATGTGGGGGTTACTGGGAGCAAGTCATCTTCTGAAGAAAACACGGAGTTTCTACCAATACTTCGGTCAGGAAGCTGTGCTGAAAGAGGACCTAAACAATATATGGAAGACGAACACATATGTATAGATAATCTTATTCAGCATATAGGTCCTGCTTCAACTATTCCTTTACCTGGAGCTTTTTATGGGGTGTTTGATGGCCATGGGGGTACAGATGCAGCTTTGTTCATAAGAAATAACATCCTCAGATTCATAGTTGAGGACTCCCATTTTCCAACTTGCGTGGGGGAGGCAATTACAAGTGCGTTTGTAAAAGCTGATTATGCATTTGCAGATTCTAGTTCGCTTGATATCTCATCTGGCACCACTGCTTTAACTGCTCTTGTATTCGGAAGGACCATGATAGTTGCCAATGCTGGGGATTGTAGAGCTGTACTGGGGAGGCGTAAACCAAATTGCATTTCAGAAAGGCTAAGGATTGAGAAACTTGGCGGGGTGGTATATGATGGATACTTGAATGGCCAGTTATCTGTTTCCCGTGCCTTAGGAGACTGGCACATGAAGGGTCACAAGGGTTCTGCCTACCCCTTGAGTGCTGAGCCAGAGCTGCAGGAAATCAACCTGACTGAGGATGATGAGTTCTTGATTATGGGCTGCGACGGCCTATGGGATGTAATGAGTAACCAATGTGCTGTAACCATGGCAAGGAAAGAATTGATGATACATAATGATCCTCAAAAGGGAAAAGAGACACCTCCTTCTCGAGTCAGGAGGAGTATATCGGCAGAAGGCCTCAATTTACTTAAGGGTGTATTGGACTGTTAG

Predicted protein sequences of Glyma04g01770

Limit To All Plant Sequences

>Glyma04g01770.2   sequence type=predicted peptide   gene model=Glyma04g01770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVGMDFPPPFTMLEAKDSAFVVDDQKSGDLNDIKPMTKGKPPRHASTLRHSISNTRLLAISDLSLDVGVTGSKSSSEENTEFLPILRSGSCAERGPKQYMEDEHICIDNLIQHIGPASTIPLPGAFYGVFDGHGGTDAALFIRNNILRFIVEDSHFPTCVGEAITSAFVKADYAFADSSSLDISSGTTALTALVFGRTMIVANAGDCRAVLGRRKPNCISERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGHKGSAYPLSAEPELQEINLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQKGKETPPSRVRRSISAEGLNLLKGVLDC*

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