Glyma04g01760 - SoyBase

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Report for Sequence Feature Glyma04g01760

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1173322
stop:	1177988
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G42540	AT	Annotation by Michelle Graham. TAIR10: glutamate receptor 3.3 \| chr1:15973489-15976703 FORWARD LENGTH=933	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0006874	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis	SoyBase	N/A	ISS
GO:0007186	GO-bp	Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0071230	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to amino acid stimulus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004965	GO-mf	Annotation by Michelle Graham. GO Molecular Function: G-protein coupled GABA receptor activity	SoyBase	N/A	ISS
GO:0004970	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ionotropic glutamate receptor activity	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005217	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intracellular ligand-gated ion channel activity	SoyBase	N/A	ISS
GO:0005234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: extracellular-glutamate-gated ion channel activity	SoyBase	N/A	ISS
GO:0005262	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium channel activity	SoyBase	N/A	ISS
GO:0008066	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamate receptor activity	SoyBase	N/A	ISS
KOG1052	KOG	Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits	JGI		ISS
PTHR18966	Panther	IONOTROPIC GLUTAMATE RECEPTOR-RELATED	JGI		ISS
PTHR18966:SF7	Panther	gb def: agcp6329 [anopheles gambiae str. pest]	JGI		ISS
PF00060	PFAM	Ligand-gated ion channel	JGI		ISS
PF00497	PFAM	Bacterial extracellular solute-binding proteins, family 3	JGI		ISS
PF01094	PFAM	Receptor family ligand binding region	JGI		ISS
UniRef100_I1JST3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamate receptor (Fragment) n=1 Tax=Glycine max RepID=I1JST3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JST3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glutamate receptor (Fragment) n=1 Tax=Glycine max RepID=I1JST3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01760

Paralog	Evidence	Comments
Glyma06g01860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g016000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01760

Limit To All Plant Sequences

>Glyma04g01760.1   sequence type=CDS   gene model=Glyma04g01760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTGTTCTGGGTTGTTTGTTGGGTGGTGTCGTGTTTGGGAGTATCATCAGTAACTCCTTTTGTGGCGGCTGCAAATTTGTCATCCTCAAGACCCGCCTTTGTGCACATTGGAGCAATCTTCAGCATGGATTCTGTTCTTGGGAAAGTCGCTAAAATTACATTGGAGGAAGCCGTCAAAGATGTAAACGCCGACAAAACCATTCTACATGGAACTCAACTTGTTCTCTCTATGCAAAATTCCAATCACAGTGGTTTCGTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGATTGCTATAATAGGGCCACAATCTTCTGTGACTGCCCACATAATATCCCATGTTGCAAATGAACTCCGGGTTCCTTTAGTGTCATTTGCGGCTACAGACCCCACCCTTTCATCGCTGCAGTTCCCTTTCTTTGTGAGGACAACACAGAGTGATTTGTACCAAATGAAGGCAGTTGCTGAAATTATTGATTATTATGGTTGGAAGGAGGTGATTGCCATATATGTGGATGATGATTATGGGCGAAATGGCGTGGCCGCATTGGATGATGAACTAGCTTCAAGGCGTTGTAGAATCTCCTTCAAAGAAGGAATTAAATCAGGAACCAAAGTTGACCGGGGTGAAATTACAAGTTTACTTGTGAAAGTGGCACTGATGCAATCTCGGGTCATTGTTCTCCATGCACAAACTGATTCTGGATTTATGATTTTCAATTTGGCGCGTTATCTTGGGATGACAGACAATGGCTATGTGTGGATAGTCACAGACTGGCTCTCTTCTTTTCTGGATTCCTCTTCTCTCCCTTCAGAGACAATGGATGTTCTCCAAGGAGTGCTTGTTTTGCGCCAGCATACACCTGATTCGGATAGAAAAAGGGCATTTCTCTCTAGGTGGAAGAAGTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTGTTTGGCTAGTTGCACGGGCTATTGATGCTTTTTTCAGTCAGGGTGGGATTGTTTCGTGTACCAATTACACAAGTTTAGGTGGTGATAAGGGAGGTGATCTTAACCTTGATGCAATGAGCATTTTTGACAATGGAACTCTTCTGTTGAAGAACATATTGCAGAGTGACTTTGTTGGATTATCAGGTCAAATGAAATTTGAACCAGACCGGTCTCTTGTTCATCCTGCCTATGACGTCCTTAATGTGGTTGGAAATGGCCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTCTGTCAATTGTATCTCCTGAGATATTCTATGCAAAGCCACCTAATAGATCAAGTGCAAATCAGAAGCTATACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCTCGTGGGTGGGTCTTCCCAAACAATGGTAGACAATTGAGAATTGGTGTGCCTATCCGAGTCAGTTACCGTGAATTTGTGGCACCGGTGCAGGGAACAGAGATGTTTAAAGGTTTCTGTGTTGATGTATTCACAGCAGCAGTAAACTTGTTGCCTTATGCTGTTCCTTACCGTTTCGTCCCATTTGGAGACGGCCACAAAAATCCAAGCTACACACAACTTGTCAACTTAATCACAACTGGTTACTTTGATGGCGCCATTGGTGACATTGCTATTGTCACAAACCGGACAAGGATTGTAGATTTTACACAGCCATATGCTGCGTCTGGACTTGTTGTGGTGGCCCCTTTCAAGAAAATCAATTCTGGTGGTTGGTCTTTCTTGCAGCCATTTACTCCTCTTATGTGGATTGTGACTGGTTGTTTATTCCTTTTCATTGGGATAGTTGTATGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCTAGGCAGCAAATTATAACCATGTTGTGGTTTAGCCTATCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTTCTCTTGGTCGGTTGGTGATGCTCATATGGTTATTTGTGGTTTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATATTCTCCTATCAGTGGAATAGAGAGCTTAAAAGCTAGTGACGAACCTATAGGGTTCCCAGTGGGTTCATTTGCAGAACATTACTTGATTCAAGATTTAGGAATAGCCAAATCTAGGCTTATTCCACTTGGATCTCCAGAAGAATATGCTAAGGCACTCCAGCTTGGTCCTAAAAGAGGAGGAGTTGCTGCTATTGTTGATGAACGACCCTATGTCGAAATCTTCTTATCAAGCCAGTGCACATTCAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCTAGGGACTCTCCTTTGGCTGTAGACATGTCAACTGCCATTCTACAGCTTTCTGAAACTGGTGATCTACAGCGGATTCATGATAAGTGGATGACACGAAGCTCTTGTAGTTTAGAGAATGCTGAAATTGATTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTCTTTCTCATTTGCGGGATAGCTTGCTTTATTGCTCTTGTTTTGCATTTTATGCAGCTTATGTTCCAGTTATGGCAATCTCCTCCTTCTGAACCTGCTTCTAGTGCTAGCTCAATTTCTGGTCGTTTTCAAAGATTTCTTACACTCATTGATGAGAAGGAAGATCCATCTAAGAGTAAAGGAAGAAAGAGGAATGGAGATGAAAGATCGCTTGAAGATCAACTGGGAAGGCAGCCAAAGAGGGTACAGACAGAAATAAAGTTTTCCACATAG

Predicted protein sequences of Glyma04g01760

Limit To All Plant Sequences

>Glyma04g01760.1   sequence type=predicted peptide   gene model=Glyma04g01760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLFWVVCWVVSCLGVSSVTPFVAAANLSSSRPAFVHIGAIFSMDSVLGKVAKITLEEAVKDVNADKTILHGTQLVLSMQNSNHSGFVGMVQALRFMETDVIAIIGPQSSVTAHIISHVANELRVPLVSFAATDPTLSSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELASRRCRISFKEGIKSGTKVDRGEITSLLVKVALMQSRVIVLHAQTDSGFMIFNLARYLGMTDNGYVWIVTDWLSSFLDSSSLPSETMDVLQGVLVLRQHTPDSDRKRAFLSRWKKLTGGSLGLHSYGLYAYDSVWLVARAIDAFFSQGGIVSCTNYTSLGGDKGGDLNLDAMSIFDNGTLLLKNILQSDFVGLSGQMKFEPDRSLVHPAYDVLNVVGNGLRRVGYWSNYSGLSIVSPEIFYAKPPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSYREFVAPVQGTEMFKGFCVDVFTAAVNLLPYAVPYRFVPFGDGHKNPSYTQLVNLITTGYFDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPLMWIVTGCLFLFIGIVVWILEHRINDEFRGPPRQQIITMLWFSLSTLFFSHRENTMSSLGRLVMLIWLFVVLILTSSYTASLTSILTVQQLYSPISGIESLKASDEPIGFPVGSFAEHYLIQDLGIAKSRLIPLGSPEEYAKALQLGPKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSETGDLQRIHDKWMTRSSCSLENAEIDSDRLQLKSFWGLFLICGIACFIALVLHFMQLMFQLWQSPPSEPASSASSISGRFQRFLTLIDEKEDPSKSKGRKRNGDERSLEDQLGRQPKRVQTEIKFST*

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