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Report for Sequence Feature Glyma04g01750

Feature Type:gene_model
Chromosome:Gm04
Start:1166583
stop:1170060
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G42970AT Annotation by Michelle Graham. TAIR10: glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127552-16129584 FORWARD LENGTH=447 SoyBaseE_val: 0ISS
GO:0006006GO-bp Annotation by Michelle Graham. GO Biological Process: glucose metabolic process SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009773GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0010304GO-bp Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process SoyBaseN/AISS
GO:0015994GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0019216GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process SoyBaseN/AISS
GO:0019253GO-bp Annotation by Michelle Graham. GO Biological Process: reductive pentose-phosphate cycle SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0031408GO-bp Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004365GO-mf Annotation by Michelle Graham. GO Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity SoyBaseN/AISS
GO:0016620GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0047100GO-mf Annotation by Michelle Graham. GO Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity SoyBaseN/AISS
GO:0050661GO-mf Annotation by Michelle Graham. GO Molecular Function: NADP binding SoyBaseN/AISS
GO:0051287GO-mf Annotation by Michelle Graham. GO Molecular Function: NAD binding SoyBaseN/AISS
KOG0657 KOG Glyceraldehyde 3-phosphate dehydrogenase JGI ISS
PTHR10836Panther GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE JGI ISS
PF00044PFAM Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JGI ISS
PF02672PFAM CP12 domain JGI ISS
PF02800PFAM Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JGI ISS
UniRef100_C6T9R8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T9R8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q38IX0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glyceraldehyde-3-phosphate dehydrogenase B subunit n=1 Tax=Glycine max RepID=Q38IX0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g01750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01750
ParalogEvidenceComments
Glyma06g01850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g015900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g01750
>Glyma04g01750.2   sequence type=transcript   gene model=Glyma04g01750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCAAACATTATCTTATCCTATAGATTTTTCTTACAACTTATTCACCACTCGTTCCCGTTACTCCCCAGCAACCATAATTTTCATTTTATTATTTTTTTGACAAGCAGCTCTAGAAAAATCTGCAAAGAATAAAACAAGAGGAGGAAATGCAACTTACTTGTTGATATAAACTTCACAGAGAGAAAGTTGTTGTAAAGCCTTGTTGCTGCCATGGCCACCCACGCGGCTCTTGCTTCTACAAGGATCCCTTCAAACACAAGGTTCCCATCCAAGGCCTCTCACTCTTTCCCAACCCAATGCGCCTTAAAGAGACTTGAGGTGACAGAATTCTCTGGGCTTAGATCCACTTCATGTGTCACATATGCTAACAGTGCTAGAGAATCTTCCTTTTTTGATCTTGTAGCTTCCCAACTCACTCCCAAGACCAATGGATCAACTCCTGTGAGGGGAGAGACAGTGGCCAAGTTGAAGGTGGCAATCAATGGTTTCGGACGCATTGGTAGAAACTTCCTTCGCTGCTGGCACGGCCGAAAAGACTCACCCCTTGAAGTCGTTGTTGTCAACGACAGTGGTGGTGTCAAGAATGCTTCGCACCTGCTGAAATATGATTCTATGCTGGGAACCTTTAAGGCAGATGTGAAAATACTAGACAATGAAACCATCACTGTTGATGGTAAGTCCATCAAGGTTGTTTCAAGCAGGGACCCTCTTAAGCTTCCATGGGCTGAGCTTGGAATTGACATTGTTATTGAGGGAACGGGAGTGTTTGTGGATGGCCCTGGGGCTGGCAAACACATCCAAGCAGGTGCTAAGAAGGTTATCATCACTGCTCCAGCAAAGGGTGCTGATATTCCAACTTATGTTGTCGGAGTAAATGAAGGGGACTACACTCATGAGATCTCTAACATTATAAGCAACGCTTCCTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGCAGAGTTTGGAATTGTGAAGGGAACCATGACAACCACGCATTCCTACACTGGAGACCAGAGGCTTTTGGATGCTTCACACCGTGACTTGAGAAGAGCCAGGGCTGCAGCACTTAACATTGTCCCAACCAGCACAGGAGCTGCCAAGGCCGTGTCTCTAGTGTTGCCACAGCTGAAGGGCAAGCTCAATGGAATAGCGCTCCGTGTGCCTACACCCAATGTTTCAGTTGTTGACCTTGTTGTGAATGTTGAGAAGAAGGGTCTTACTGCTGAAGATGTGAATGCAGCATTCAGAAAGGCAGCTGAGGGGCCGCTCAAAGGTGTATTGGACGTGTGTGATGTTCCACTTGTGTCTATCGACTTCCGCTGCTCTGATGTTTCCTCTACTATTGACTCCTCCTTGACTATGGTCATGGGAGATGATATGGTTAAAGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGGTTAGTTGGAACATGACTTGGTATAATAAACTCTCATCACTGACTCATTTTTTAAACATTATACTCACTAGATAGAATTAGATAAGAACATTTGTAATTTGATTTTTACATTATTATTCAATCATAAACTATTATTTAGTGAGTTTGTTAATTTCTATAATAATTATTTTAGAAGTTATACTAAGGTCGATTTCTCGTTGTGCTAA
Coding sequences of Glyma04g01750
>Glyma04g01750.1   sequence type=CDS   gene model=Glyma04g01750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCCACGCGGCTCTTGCTTCTACAAGGATCCCTTCAAACACAAGGTTCCCATCCAAGGCCTCTCACTCTTTCCCAACCCAATGCGCCTTAAAGAGACTTGAGGTGACAGAATTCTCTGGGCTTAGATCCACTTCATGTGTCACATATGCTAACAGTGCTAGAGAATCTTCCTTTTTTGATCTTGTAGCTTCCCAACTCACTCCCAAGACCAATGGATCAACTCCTGTGAGGGGAGAGACAGTGGCCAAGTTGAAGGTGGCAATCAATGGTTTCGGACGCATTGGTAGAAACTTCCTTCGCTGCTGGCACGGCCGAAAAGACTCACCCCTTGAAGTCGTTGTTGTCAACGACAGTGGTGGTGTCAAGAATGCTTCGCACCTGCTGAAATATGATTCTATGCTGGGAACCTTTAAGGCAGATGTGAAAATACTAGACAATGAAACCATCACTGTTGATGGTAAGTCCATCAAGGTTGTTTCAAGCAGGGACCCTCTTAAGCTTCCATGGGCTGAGCTTGGAATTGACATTGTTATTGAGGGAACGGGAGTGTTTGTGGATGGCCCTGGGGCTGGCAAACACATCCAAGCAGGTGCTAAGAAGGTTATCATCACTGCTCCAGCAAAGGGTGCTGATATTCCAACTTATGTTGTCGGAGTAAATGAAGGGGACTACACTCATGAGATCTCTAACATTATAAGCAACGCTTCCTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGCAGAGTTTGGAATTGTGAAGGGAACCATGACAACCACGCATTCCTACACTGGAGACCAGAGGCTTTTGGATGCTTCACACCGTGACTTGAGAAGAGCCAGGGCTGCAGCACTTAACATTGTCCCAACCAGCACAGGAGCTGCCAAGGCCGTGTCTCTAGTGTTGCCACAGCTGAAGGGCAAGCTCAATGGAATAGCGCTCCGTGTGCCTACACCCAATGTTTCAGTTGTTGACCTTGTTGTGAATGTTGAGAAGAAGGGTCTTACTGCTGAAGATGTGAATGCAGCATTCAGAAAGGCAGCTGAGGGGCCGCTCAAAGGTGTATTGGACGTGTGTGATGTTCCACTTGTGTCTATCGACTTCCGCTGCTCTGATGTTTCCTCTACTATTGACTCCTCCTTGACTATGGTCATGGGAGATGATATGGTTAAAGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGCCAAAGAGTGGTCGATTTGGCACATCTAGTAGCAAGCAAGTGGCCAGGGGCACCTAAAGCGGGGAGTGGAGACCCATTGGAGGATTTCTGCGAGACAAACCCTGCTGATGAGGAATGCAAAGTTTATGAATAG

>Glyma04g01750.2   sequence type=CDS   gene model=Glyma04g01750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCCACGCGGCTCTTGCTTCTACAAGGATCCCTTCAAACACAAGGTTCCCATCCAAGGCCTCTCACTCTTTCCCAACCCAATGCGCCTTAAAGAGACTTGAGGTGACAGAATTCTCTGGGCTTAGATCCACTTCATGTGTCACATATGCTAACAGTGCTAGAGAATCTTCCTTTTTTGATCTTGTAGCTTCCCAACTCACTCCCAAGACCAATGGATCAACTCCTGTGAGGGGAGAGACAGTGGCCAAGTTGAAGGTGGCAATCAATGGTTTCGGACGCATTGGTAGAAACTTCCTTCGCTGCTGGCACGGCCGAAAAGACTCACCCCTTGAAGTCGTTGTTGTCAACGACAGTGGTGGTGTCAAGAATGCTTCGCACCTGCTGAAATATGATTCTATGCTGGGAACCTTTAAGGCAGATGTGAAAATACTAGACAATGAAACCATCACTGTTGATGGTAAGTCCATCAAGGTTGTTTCAAGCAGGGACCCTCTTAAGCTTCCATGGGCTGAGCTTGGAATTGACATTGTTATTGAGGGAACGGGAGTGTTTGTGGATGGCCCTGGGGCTGGCAAACACATCCAAGCAGGTGCTAAGAAGGTTATCATCACTGCTCCAGCAAAGGGTGCTGATATTCCAACTTATGTTGTCGGAGTAAATGAAGGGGACTACACTCATGAGATCTCTAACATTATAAGCAACGCTTCCTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGCAGAGTTTGGAATTGTGAAGGGAACCATGACAACCACGCATTCCTACACTGGAGACCAGAGGCTTTTGGATGCTTCACACCGTGACTTGAGAAGAGCCAGGGCTGCAGCACTTAACATTGTCCCAACCAGCACAGGAGCTGCCAAGGCCGTGTCTCTAGTGTTGCCACAGCTGAAGGGCAAGCTCAATGGAATAGCGCTCCGTGTGCCTACACCCAATGTTTCAGTTGTTGACCTTGTTGTGAATGTTGAGAAGAAGGGTCTTACTGCTGAAGATGTGAATGCAGCATTCAGAAAGGCAGCTGAGGGGCCGCTCAAAGGTGTATTGGACGTGTGTGATGTTCCACTTGTGTCTATCGACTTCCGCTGCTCTGATGTTTCCTCTACTATTGACTCCTCCTTGACTATGGTCATGGGAGATGATATGGTTAAAGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGGTTAGTTGGAACATGA
Predicted protein sequences of Glyma04g01750
>Glyma04g01750.1   sequence type=predicted peptide   gene model=Glyma04g01750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATHAALASTRIPSNTRFPSKASHSFPTQCALKRLEVTEFSGLRSTSCVTYANSARESSFFDLVASQLTPKTNGSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVNDSGGVKNASHLLKYDSMLGTFKADVKILDNETITVDGKSIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYTHEISNIISNASCTTNCLAPFVKILDAEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGLTAEDVNAAFRKAAEGPLKGVLDVCDVPLVSIDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAPKAGSGDPLEDFCETNPADEECKVYE*

>Glyma04g01750.2   sequence type=predicted peptide   gene model=Glyma04g01750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATHAALASTRIPSNTRFPSKASHSFPTQCALKRLEVTEFSGLRSTSCVTYANSARESSFFDLVASQLTPKTNGSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVNDSGGVKNASHLLKYDSMLGTFKADVKILDNETITVDGKSIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYTHEISNIISNASCTTNCLAPFVKILDAEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGLTAEDVNAAFRKAAEGPLKGVLDVCDVPLVSIDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYRLVGT*






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