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Report for Sequence Feature Glyma04g01740

Feature Type:gene_model
Chromosome:Gm04
Start:1161646
stop:1164559
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01740
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G42960AT Annotation by Michelle Graham. TAIR10: expressed protein localized to the inner membrane of the chloroplast. | chr1:16125863-16127080 FORWARD LENGTH=168 SoyBaseE_val: 3.00E-59ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6SZ03UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ03_SOYBN SoyBaseE_val: 1.00E-114ISS

Expression Patterns of Glyma04g01740
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01740
ParalogEvidenceComments
Glyma06g01835 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01740 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g015800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01740
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g01740
>Glyma04g01740.1   sequence type=CDS   gene model=Glyma04g01740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCTTCCCACCACTTTCGCTATAACCAAATCTGCATCCTCCATAAACAAGGTGGACCACTCTCTGGTCAAGATCAAACCATACAACTTCTCTCTCAATCTAAATCGTCAAGGGACCATGCAAACATCTTTAACCAGAAGGCCTCTAACAATTCAAGCTACGTATAGTGATGGTGGAAGGCCCAGCAGTGCTAGTGTATTTGTTGGTGGGTTTCTCTTGGGAGGATTAATAGTTGGTACTCTTGGTTGCGTGTATGCACCTCAGATCAGCAAGGCCCTAGCTGGAGCTGACAGGAAGGAGTTAATGAGAAAATTGCCAAAGTTTATATATGATGAAGAAAAGGCTTTAGAGAAAACCCGGAAAGTACTGGCTGAGAAGATTGAACAACTGAATGCTGCCATAGATGATGTTTCTGCTCAGCTAAGGTCAGAGGAGGCCTCAAATGGAGTAGCTGTGAACTCTGATGAAATTGAAGCTGCCACATGA
Predicted protein sequences of Glyma04g01740
>Glyma04g01740.1   sequence type=predicted peptide   gene model=Glyma04g01740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLPTTFAITKSASSINKVDHSLVKIKPYNFSLNLNRQGTMQTSLTRRPLTIQATYSDGGRPSSASVFVGGFLLGGLIVGTLGCVYAPQISKALAGADRKELMRKLPKFIYDEEKALEKTRKVLAEKIEQLNAAIDDVSAQLRSEEASNGVAVNSDEIEAAT*






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