SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g01730

Feature Type:gene_model
Chromosome:Gm04
Start:1153743
stop:1157564
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39200AT Annotation by Michelle Graham. TAIR10: Seven transmembrane MLO family protein | chr2:16356255-16359797 REVERSE LENGTH=576 SoyBaseE_val: 0ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009817GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0015824GO-bp Annotation by Michelle Graham. GO Biological Process: proline transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PF03094PFAM Mlo family JGI ISS
UniRef100_I1JSS9UniRef Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein n=1 Tax=Glycine max RepID=I1JSS9_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233A6A5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A6A5 related cluster n=1 Tax=unknown RepID=UPI000233A6A5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g01730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01730
ParalogEvidenceComments
Glyma06g01820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g015700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g01730
>Glyma04g01730.1   sequence type=CDS   gene model=Glyma04g01730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGGTGCTGCTACTGCAGAAAGAAGCTTAAAGGAGACACCCACATGGGCAGTAGCTGCTGTTTGTTCAGTGTTCATCATCATCTCTGTATTAATTGAACACGGAATCCATTCACTTGGAAAGTGGTTTCAAAAACGACATAAGAAGGCCATGAATGAAGCCTTGGAGAAAATCAAATCGGAATTAATGTTATTAGGATTCATATCCCTATTAATAACTTTTGGTACAAAATACATTGCAAAGATATGCATCCCTGTGTCAGCTGGTGACATAATGCTTCCATGCAAGAAGGTGGAAGTGTCAGATTCAGATGATGACTCAAATGACAGAAGGAAGCTACTTTCTTTTGACGACAACGTGGTGGAATGGCGTCGAGTTTTAGCAGCTGCATCTGGGGGTGACTATTGCTCACAAAAAGGTAAAGTGCCTTTGATCTCTCAGTCTGGGGTGCACCAGTTGCATATATTTATATTTGTCCTCGCTGTTTTTCACATTTTCTACAGCGTCATGACCATGGTTCTAGCCAGAGCAAAAATGAAGAAATGGAAGGCTTGGGAAGCAGAAACATCTTCCCTGGAGTATCAATTTACAAATGATCCTGCAAGGTTCAGGTTAGCGCATCAAACATCATTCGTTAGGCGTCACTCTGGTTGGTCTAGGATGCCAGGAATTCGATGGATAGTGGCATTCTTCAGGCAATTTTTCGGGTCTGTCACTAAGGTGGATTACATGACCATGCGGCACGGATTTATTAACGCACATTTTGCTCCCGATAGCAAATTTGACTTTCAAAAATACATTAAAAGATCCATGGAGGACGACTTTAAAGTGGTCGTGGGTATAAGCATTCCGTTATGGGTTTTTGCAATCGTCTTTATGCTTGTGAACGTTTACAAATGGTACACGCTCACTTGGCTATCATTAGCACCACTAGTGATACTTCTATTAGTGGGCACCAAGCTTGAACTTATAATCATGGAAATGGCCCAACAAATCCAAGACCGAGCCACAATTGTTAGAGGAGTCCCTATTGTAGAGCCAAACAACAAGTATTTTTGGTTTAACCGGCCCCAGTGGATTATCTTCTTAATTCATTTTACCTTGTTCGAGAATGCATTCCAAATAGCCTTTTTCTTGTGGACATGGTATGAGTTTAAGATCACATCTTGCTTCCATGAAAACTTGCCCCTAATACTGACAAGGGTTGTCCTTGGGATAGCCTTACAAGTCGTATGCAGTTACATCACATTCCCTCTCTATTCCCTAGTAACACAGATGGGATCTCACATGAAGAAAACAATCTTTGAGGAGCAAACTGCAAAGGCACTTAAGAAATGGCAAAAGGCTGCAAAGGACAAGAGAAAGTTAAGGAAAGCAGGAATAGATATTCCTTCAGGGACTATGAGTGGGGAAACAACACCAAGCCAAGGCACATCACCCTTGCATTTGCTTCACAAGTACAAGCCAAGCCACACAGACACAGATAGTGTTCTTTATTCTCCACGATCATACCAATCTGACACTGACTTGTCCGAGACAGAGGGATCTTCACACCAATTGAATGAAATAACACAAACGCGTCAAGCTTCAAGAAATGGAGAAACTCATAATATCGATTTTTCCTTTGTGAAGCCTTAA
Predicted protein sequences of Glyma04g01730
>Glyma04g01730.1   sequence type=predicted peptide   gene model=Glyma04g01730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGAATAERSLKETPTWAVAAVCSVFIIISVLIEHGIHSLGKWFQKRHKKAMNEALEKIKSELMLLGFISLLITFGTKYIAKICIPVSAGDIMLPCKKVEVSDSDDDSNDRRKLLSFDDNVVEWRRVLAAASGGDYCSQKGKVPLISQSGVHQLHIFIFVLAVFHIFYSVMTMVLARAKMKKWKAWEAETSSLEYQFTNDPARFRLAHQTSFVRRHSGWSRMPGIRWIVAFFRQFFGSVTKVDYMTMRHGFINAHFAPDSKFDFQKYIKRSMEDDFKVVVGISIPLWVFAIVFMLVNVYKWYTLTWLSLAPLVILLLVGTKLELIIMEMAQQIQDRATIVRGVPIVEPNNKYFWFNRPQWIIFLIHFTLFENAFQIAFFLWTWYEFKITSCFHENLPLILTRVVLGIALQVVCSYITFPLYSLVTQMGSHMKKTIFEEQTAKALKKWQKAAKDKRKLRKAGIDIPSGTMSGETTPSQGTSPLHLLHKYKPSHTDTDSVLYSPRSYQSDTDLSETEGSSHQLNEITQTRQASRNGETHNIDFSFVKP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo