Glyma04g01720 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g01720

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1143328
stop:	1149708
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33640	AT	Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein \| chr2:14239500-14242240 FORWARD LENGTH=565	SoyBase	E_val: 0	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1311	KOG	DHHC-type Zn-finger proteins	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7J5Y8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase AKR1 n=1 Tax=Medicago truncatula RepID=G7J5Y8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JSS8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSS8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01720

Paralog	Evidence	Comments
Glyma06g01810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g015600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01720

Limit To All Plant Sequences

>Glyma04g01720.1   sequence type=CDS   gene model=Glyma04g01720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGGCGTCATGGATGGGAGCTCCCCTTTCACACTTTTCAGGTCGTGGCTATAACAGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTTGGAAAGGACATCTATGAATATTTGGCTATTGGTGTTTACTCTGTATTGGCTCTCTCCGTGTTCTTTCTTTATGTTCGATGCACTGCCATTGATCCTGCTGATAAGGGAGTCATGGTTGATTGTGACAAGACATCAAAGAATAGATCAAAACTTGATGAAGAGTTGGCAGAACCCAGCAAGATGGGACTAAAGGGTGATGGAATGTCTGATCGGCACAATTCAAATTGGTGCTCTAAAGTTGGATGTTTCTTCTGTGGTTTCCTTGTTAGAGAAGATTGCTGTAGTAATGAAGAAATTAGTCTACAGCAACAGTCTGGGGAAGAGGAGGCTTTGTTCTGCACTTTGTGCAATGCTGAGGTGCAGAAGTTTAGTAAGCATTGTCGAAGTTGTGACAAATGTGTTGATGGATTTGATCACCATTGTCGGTGGTTGAACAATTGTGTTGGAAAGAAGAATTACATCACGTTTGTGTGTCTTATGGCAGTGAGCCTAGTTTGGCTTATAGTTGAATGTGGAGTTGGGATTGCAGTACTTGTCAGATGTTTCGTTGATAAGAAAGGTACAGAGAATCAGATAGCTGAAAAACTTGGAGCTGGTTTCTCTCGAGTCCCATTTGCTATTATTGTGGCCATATGCACAGCAGTTTCATTCCTTGCAACTGTACCTTTGGGAGAATTATTCTTTTTCCATATGATCCTGATACGAAAGGGTATCACAACTTACGAGTATGTTGTTGCCATGAGAACTCTAAGTGAACCACCTGGGCCTTCAGTTGATGGGGGTGAACAGCAGAGTCTACCATCGTCTCCTACTAGTTCAGCTGTCACTGCAATGAGTGGAAGAAGCTCCGTTGGAATGAGTATACAGTACAAAGGTGCCTGGTGTACACCGCCAAGGATCTTTATGGACCACCCGGATGAAATTATACCACATTTGGAGCCGGGACGCCTACCATCCACTGTTGATCCAGATGCCGTACAACCACCTGACAAAGGGAGAAAAATGAACCAGCGCCCTGTGCGTATAAGTGCATGGAAACTTGCAAAATTGGATTCTAATGAGGCAACTAAGGCAGCTGCTAAGGCCAGAGCATCATCGTCTGTGCTTCGTCCAATTAGTTCTCGACCTCATGCGTATGATGTTGATCATGTATCCAGTAGCAATGTGAGTGGAAGAAGCAGCCCAATCAGCAATCAAGGATTTCATATAAAAAATGATACAGTGGGGACATCAAGGTTATCTCCTTCCAAGAGCTCGTACCCTCCTAGTCAAGCAAGCAAGGATGACATAGATGCATCATGCCAACACAGTATGAGTAACTTTAGCAGTCCACGAGTCTCCAACCTTACTCCTTCACCAATGCAGAGGCCAGGTTTGAACAGAGACCATTTCAACCCCATGTATCAACAACCATCGGGAAACCAGTCTCCTTCGTCAGCTAAAGGAAGTGAAGGGAACATAAATCCAGTTCACGACAATGTGCCACGTGTACCAATGAGAAGCAACACCTTAGCTGTTTCAGATAATAGAAGATCGTCAGTGTTTTGGGATCAAGCAGCTGGACGCTTTGTCTCGTCCTCATCAAGAGGTCCCGGAACAGAATTATTGTACACGGGCCGTTCTATATTTTTTGGCAGCCCCGTTGTGAATGAACAGCCAAGTACAGGAACAAGAAGTAGCAGTTCAGTAGTAGCTGGTATTCCGGATAGAGATTCTTCTACATTAAGGGATTTTCAGCAAGGTAGATCACATAGGGGTGGCCAGCTTCCTGTGTTTGTTCCTGGTTGTGGTTATGCCCAGCAAAACAAGTTTCCTTAG

Predicted protein sequences of Glyma04g01720

Limit To All Plant Sequences

>Glyma04g01720.1   sequence type=predicted peptide   gene model=Glyma04g01720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARRHGWELPFHTFQVVAITVFFLLSIAYYAFFAPFLGKDIYEYLAIGVYSVLALSVFFLYVRCTAIDPADKGVMVDCDKTSKNRSKLDEELAEPSKMGLKGDGMSDRHNSNWCSKVGCFFCGFLVREDCCSNEEISLQQQSGEEEALFCTLCNAEVQKFSKHCRSCDKCVDGFDHHCRWLNNCVGKKNYITFVCLMAVSLVWLIVECGVGIAVLVRCFVDKKGTENQIAEKLGAGFSRVPFAIIVAICTAVSFLATVPLGELFFFHMILIRKGITTYEYVVAMRTLSEPPGPSVDGGEQQSLPSSPTSSAVTAMSGRSSVGMSIQYKGAWCTPPRIFMDHPDEIIPHLEPGRLPSTVDPDAVQPPDKGRKMNQRPVRISAWKLAKLDSNEATKAAAKARASSSVLRPISSRPHAYDVDHVSSSNVSGRSSPISNQGFHIKNDTVGTSRLSPSKSSYPPSQASKDDIDASCQHSMSNFSSPRVSNLTPSPMQRPGLNRDHFNPMYQQPSGNQSPSSAKGSEGNINPVHDNVPRVPMRSNTLAVSDNRRSSVFWDQAAGRFVSSSSRGPGTELLYTGRSIFFGSPVVNEQPSTGTRSSSSVVAGIPDRDSSTLRDFQQGRSHRGGQLPVFVPGCGYAQQNKFP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain