Glyma04g01700 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g01700

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1135405
stop:	1137543
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20810	AT	Annotation by Michelle Graham. TAIR10: FKBP-like peptidyl-prolyl cis-trans isomerase family protein \| chr1:7232025-7233367 FORWARD LENGTH=232	SoyBase	E_val: 3.00E-81	ISS
GO:0000413	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein peptidyl-prolyl isomerization	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0018208	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0031977	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
GO:0005528	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FK506 binding	SoyBase	N/A	ISS
PTHR10516	Panther	FK506 BINDING PROTEIN	JGI		ISS
PTHR10516:SF27	Panther	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	JGI		ISS
PF00254	PFAM	FKBP-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
UniRef100_I1JSS3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1JSS3_SOYBN	SoyBase	E_val: 2.00E-165	ISS
UniRef100_I1JSS3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1JSS3_SOYBN	SoyBase	E_val: 2.00E-165	ISS

Expression Patterns of Glyma04g01700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g01700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g015400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01700

Limit To All Plant Sequences

>Glyma04g01700.2   sequence type=transcript   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAGACATAATTTTTTATATAAATTTATATTGTCCCATGATTTTCACAATAAATATACAATTATAAATAGGTGGGCAAGAAGTAAGAGAAAGAGAGAAAAGGGCAAATGGGTAATTGTAGGGAGTGGATAGGCTAAAACGAAAGCAGAGGTGGAGGAGGAGTAGTGTAGTGGCAATGAGTTCCCCTTGCAGTTGCGCTTGCGCTTCTACTAATTGGAGCGTTGATTATGGTTATGGAGGTGGTGGCGTGCTTTCAAATTCAAAGGTAAGAAGCAGGAGGTCCAAAGAAATATCCATGGCACATTCAGTTTGTGGTTCGAGAAGGTCCACTGCACTTGTGATTTCATCCTTGCCTTTCGGCTTCCTTTTCCTATCTCCGCCAGCTGAGGCCAGACGCAACAAGAAGGCCATCCCCGAAGACCAATACATTACTAGCCCTGATGGATTGAAATACTATGATTTGGTTGAGGGCAAAGGTCCAGTCGCTGAAAAAGGAACAACTGTTCAGGTACACTTTGATTGCTTATATCGCGGAATCACAGCTGTCTCCAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTATCATTGCTCAGCCATATGAATTCAAAGTGGGAGCTCCACCGGGAAAGGAAAGGAAGCGCGAATTTGTTGACAACCCAAATGGTTTATTCTCTGCTCAAGCAGCACCAAAACCTCCCCCTGCTGTGTATATAATAGTTGAAGGAATGCGAGTTGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAATGGCTATGGTCAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATGTTGAGCTTCTGCAAGTTGTAGCTACCTGAAGACTAGACCTCAGCTTGACTCCATTCTTATGAACCGGTTGATAATTTTGACTTCAGAATTTGTAGCCTGTGAAGCTGCGACTATTATTGTTTTTTACCCTATGTTTGGATAAAGAAAAATAAGATAGAGAAGAAATAAAAAATTTGAAATACAAAAGAGAAAATGAAGAAAAAGAAGAGAAAAAAAGTTGAGTTTAAGAATAATCTTTTTTTAAGTAGGAAAAGAATATTTATATTATTTATTTATTGAAATTGTAATGGACTCATCTTCTGCGATTCTAAAACTAATCTTAGTATATATTGAATTGATTTTATTTTTTTCTTTATAAGAA

>Glyma04g01700.3   sequence type=transcript   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAGACATAATTTTTTATATAAATTTATATTGTCCCATGATTTTCACAATAAATATACAATTATAAATAGGTGGGCAAGAAGTAAGAGAAAGAGAGAAAAGGGCAAATGGGTAATTGTAGGGAGTGGATAGGCTAAAACGAAAGCAGAGGTGGAGGAGGAGTAGTGTAGTGGCAATGAGTTCCCCTTGCAGTTGCGCTTGCGCTTCTACTAATTGGAGCGTTGATTATGGTTATGGAGGTGGTGGCGTGCTTTCAAATTCAAAGGTAAGAAGCAGGAGGTCCAAAGAAATATCCATGGCACATTCAGTTTGTGGTTCGAGAAGGTCCACTGCACTTGTGATTTCATCCTTGCCTTTCGGCTTCCTTTTCCTATCTCCGCCAGCTGAGGCCAGACGCAACAAGAAGGCCATCCCCGAAGACCAATACATTACTAGCCCTGATGGATTGAAATACTATGATTTGGTTGAGGGCAAAGGTCCAGTCGCTGAAAAAGGAACAACTGTTCAGGTACACTTTGATTGCTTATATCGCGGAATCACAGCTGTCTCCAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTATCATTGCTCAGCCATATGAATTCAAAGTGGGAGCTCCACCGGGAAAGGAAAGGAAGCGCGAATTTGTTGACAACCCAAATGGTTTATTCTCTGCTCAAGCAGCACCAAAACCTCCCCCTGCTGTGTATATAATAGTTGAAGGAATGCGAGTTGGTGGAAAGGTGACTCAAACTTCCTTCTATGTTTTGTCATCTTATACTGTTATTACTTATTAGTTTAGTCATGTGTCATTTCTTGAATGGTGACAGCGAACTGTGATTGTTCCTCCTGAAAATGGCTATGGTCAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATGTTGAGCTTCTGCAAGTTGTAGCTACCTGAAGACTAGACCTCAGCTTGACTCCATTCTTATGAACCGGTTGATAATTTTGACTTCAGAATTTGTAGCCTGTGAAGCTGCGACTATTATTGTTTTTTACCCTATGTTTGGATAAAGAAAAATAAGATAGAGAAGAAATAAAAAATTTGAAATACAAAAGAGAAAATGAAGAAAAAGAAGAGAAAAAAAGTTGAGTTTAAGAATAATCTTTTTTTAAGTAGGAAAAGAATATTTATATTATTTATTTATTGAAATTGTAATGGACTCATCTTCTGCGATTCTAAAACTAATCTTAGTATATATTGAATTGATTTTATTTTTTTCTTTATAAGAA

>Glyma04g01700.4   sequence type=transcript   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAGACATAATTTTTTATATAAATTTATATTGTCCCATGATTTTCACAATAAATATACAATTATAAATAGGTGGGCAAGAAGTAAGAGAAAGAGAGAAAAGGGCAAATGGGTAATTGTAGGGAGTGGATAGGCTAAAACGAAAGCAGAGGTGGAGGAGGAGTAGTGTAGTGGCAATGAGTTCCCCTTGCAGTTGCGCTTGCGCTTCTACTAATTGGAGCGTTGATTATGGTTATGGAGGTGGTGGCGTGCTTTCAAATTCAAAGGTAAGAAGCAGGAGGTCCAAAGAAATATCCATGGCACATTCAGTTTGTGGTTCGAGAAGGTCCACTGCACTTGTGATTTCATCCTTGCCTTTCGGCTTCCTTTTCCTATCTCCGCCAGCTGAGGCCAGACGCAACAAGAAGGCCATCCCCGAAGACCAATACATTACTAGCCCTGATGGATTGAAATACTATGATTTGGTTGAGGGCAAAGGTCCAGTCGCTGAAAAAGGAACAACTGTTCAGGTACACTTTGATTGCTTATATCGCGGAATCACAGCTGTCTCCAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTATCATTGCTCAGATACTATTAGAAGGTACTTGAGTGGTGCTGAATCTGATGCGTGGGTGCTTTGTTCTCTTAAGCCATATGAATTCAAAGTGGGAGCTCCACCGGGAAAGGAAAGGAAGCGCGAATTTGTTGACAACCCAAATGGTTTATTCTCTGCTCAAGCAGCACCAAAACCTCCCCCTGCTGTGTATATAATAGTTGAAGGAATGCGAGTTGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAATGGCTATGGTCAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATGTTGAGCTTCTGCAAGTTGTAGCTACCTGAAGACTAGACCTCAGCTTGACTCCATTCTTATGAACCGGTTGATAATTTTGACTTCAGAATTTGTAGCCTGTGAAGCTGCGACTATTATTGTTTTTTACCCTATGTTTGGATAAAGAAAAATAAGATAGAGAAGAAATAAAAAATTTGAAATACAAAAGAGAAAATGAAGAAAAAGAAGAGAAAAAAAGTTGAGTTTAAGAATAATCTTTTTTTAAGTAGGAAAAGAATATTTATATTATTTATTTATTGAAATTGTAATGGACTCATCTTCTGCGATTCTAAAACTAATCTTAGTATATATTGAATTGATTTTATTTTTTTCTTTATAAGAA

Coding sequences of Glyma04g01700

Limit To All Plant Sequences

>Glyma04g01700.1   sequence type=CDS   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCCCTTGCAGTTGCGCTTGCGCTTCTACTAATTGGAGCGTTGATTATGGTTATGGAGGTGGTGGCGTGCTTTCAAATTCAAAGGTAAGAAGCAGGAGGTCCAAAGAAATATCCATGGCACATTCAGTTTGTGGTTCGAGAAGGTCCACTGCACTTGTGATTTCATCCTTGCCTTTCGGCTTCCTTTTCCTATCTCCGCCAGCTGAGGCCAGACGCAACAAGAAGGCCATCCCCGAAGACCAATACATTACTAGCCCAGCTGATGGATTGAAATACTATGATTTGGTTGAGGGCAAAGGTCCAGTCGCTGAAAAAGGAACAACTGTTCAGGTACACTTTGATTGCTTATATCGCGGAATCACAGCTGTCTCCAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTATCATTGCTCAGCCATATGAATTCAAAGTGGGAGCTCCACCGGGAAAGGAAAGGAAGCGCGAATTTGTTGACAACCCAAATGGTTTATTCTCTGCTCAAGCAGCACCAAAACCTCCCCCTGCTGTGTATATAATAGTTGAAGGAATGCGAGTTGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAATGGCTATGGTCAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATGTTGAGCTTCTGCAAGTTGTAGCTACCTGA

>Glyma04g01700.2   sequence type=CDS   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCCCTTGCAGTTGCGCTTGCGCTTCTACTAATTGGAGCGTTGATTATGGTTATGGAGGTGGTGGCGTGCTTTCAAATTCAAAGGTAAGAAGCAGGAGGTCCAAAGAAATATCCATGGCACATTCAGTTTGTGGTTCGAGAAGGTCCACTGCACTTGTGATTTCATCCTTGCCTTTCGGCTTCCTTTTCCTATCTCCGCCAGCTGAGGCCAGACGCAACAAGAAGGCCATCCCCGAAGACCAATACATTACTAGCCCTGATGGATTGAAATACTATGATTTGGTTGAGGGCAAAGGTCCAGTCGCTGAAAAAGGAACAACTGTTCAGGTACACTTTGATTGCTTATATCGCGGAATCACAGCTGTCTCCAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTATCATTGCTCAGCCATATGAATTCAAAGTGGGAGCTCCACCGGGAAAGGAAAGGAAGCGCGAATTTGTTGACAACCCAAATGGTTTATTCTCTGCTCAAGCAGCACCAAAACCTCCCCCTGCTGTGTATATAATAGTTGAAGGAATGCGAGTTGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAATGGCTATGGTCAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATGTTGAGCTTCTGCAAGTTGTAGCTACCTGA

>Glyma04g01700.3   sequence type=CDS   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCCCTTGCAGTTGCGCTTGCGCTTCTACTAATTGGAGCGTTGATTATGGTTATGGAGGTGGTGGCGTGCTTTCAAATTCAAAGGTAAGAAGCAGGAGGTCCAAAGAAATATCCATGGCACATTCAGTTTGTGGTTCGAGAAGGTCCACTGCACTTGTGATTTCATCCTTGCCTTTCGGCTTCCTTTTCCTATCTCCGCCAGCTGAGGCCAGACGCAACAAGAAGGCCATCCCCGAAGACCAATACATTACTAGCCCTGATGGATTGAAATACTATGATTTGGTTGAGGGCAAAGGTCCAGTCGCTGAAAAAGGAACAACTGTTCAGGTACACTTTGATTGCTTATATCGCGGAATCACAGCTGTCTCCAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTATCATTGCTCAGCCATATGAATTCAAAGTGGGAGCTCCACCGGGAAAGGAAAGGAAGCGCGAATTTGTTGACAACCCAAATGGTTTATTCTCTGCTCAAGCAGCACCAAAACCTCCCCCTGCTGTGTATATAATAGTTGAAGGAATGCGAGTTGGTGGAAAGGTGACTCAAACTTCCTTCTATGTTTTGTCATCTTATACTGTTATTACTTATTAG

>Glyma04g01700.4   sequence type=CDS   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCCCTTGCAGTTGCGCTTGCGCTTCTACTAATTGGAGCGTTGATTATGGTTATGGAGGTGGTGGCGTGCTTTCAAATTCAAAGGTAAGAAGCAGGAGGTCCAAAGAAATATCCATGGCACATTCAGTTTGTGGTTCGAGAAGGTCCACTGCACTTGTGATTTCATCCTTGCCTTTCGGCTTCCTTTTCCTATCTCCGCCAGCTGAGGCCAGACGCAACAAGAAGGCCATCCCCGAAGACCAATACATTACTAGCCCTGATGGATTGAAATACTATGATTTGGTTGAGGGCAAAGGTCCAGTCGCTGAAAAAGGAACAACTGTTCAGGTACACTTTGATTGCTTATATCGCGGAATCACAGCTGTCTCCAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTATCATTGCTCAGATACTATTAGAAGGTACTTGA

Predicted protein sequences of Glyma04g01700

Limit To All Plant Sequences

>Glyma04g01700.1   sequence type=predicted peptide   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPCSCACASTNWSVDYGYGGGGVLSNSKVRSRRSKEISMAHSVCGSRRSTALVISSLPFGFLFLSPPAEARRNKKAIPEDQYITSPADGLKYYDLVEGKGPVAEKGTTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPPAVYIIVEGMRVGGKRTVIVPPENGYGQKGMNEIPPGATFELNVELLQVVAT*

>Glyma04g01700.2   sequence type=predicted peptide   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPCSCACASTNWSVDYGYGGGGVLSNSKVRSRRSKEISMAHSVCGSRRSTALVISSLPFGFLFLSPPAEARRNKKAIPEDQYITSPDGLKYYDLVEGKGPVAEKGTTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPPAVYIIVEGMRVGGKRTVIVPPENGYGQKGMNEIPPGATFELNVELLQVVAT*

>Glyma04g01700.3   sequence type=predicted peptide   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPCSCACASTNWSVDYGYGGGGVLSNSKVRSRRSKEISMAHSVCGSRRSTALVISSLPFGFLFLSPPAEARRNKKAIPEDQYITSPDGLKYYDLVEGKGPVAEKGTTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPPAVYIIVEGMRVGGKVTQTSFYVLSSYTVITY*

>Glyma04g01700.4   sequence type=predicted peptide   gene model=Glyma04g01700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPCSCACASTNWSVDYGYGGGGVLSNSKVRSRRSKEISMAHSVCGSRRSTALVISSLPFGFLFLSPPAEARRNKKAIPEDQYITSPDGLKYYDLVEGKGPVAEKGTTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQILLEGT*

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