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Report for Sequence Feature Glyma04g01680

Feature Type:gene_model
Chromosome:Gm04
Start:1126025
stop:1126987
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20823AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197 SoyBaseE_val: 7.00E-66ISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG2930 KOG SCF ubiquitin ligase, Rbx1 component JGI ISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PTHR22764:SF16Panther ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_C6TKF9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TKF9_SOYBN SoyBaseE_val: 9.00E-128ISS
UniRef100_G7J5Z4UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1B n=1 Tax=Medicago truncatula RepID=G7J5Z4_MEDTR SoyBaseE_val: 4.00E-82ISS

Expression Patterns of Glyma04g01680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01680
ParalogEvidenceComments
Glyma06g01770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g015200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g01680
>Glyma04g01680.1   sequence type=CDS   gene model=Glyma04g01680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCGTGCCTTGAGATATTTAGGCGAGCGAAACTCGTCCACCGACTCCGCTGTCGTCGATTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCTCTCATCTGCGTTCTCGGCCTCGTCGCCGTCGCCCGCTGCGGCTGTCTCCGCCGCCTCCGCCTCTCCTCCTCTGCAACCACTCCCCAGTCTCCTACCTCCGCCGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACAGCGGAATCGGCGGTCAAGTTTGCGGACTGCGCGATCTGCCTCACGGAGTTCGCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGCTTCCACGTCAGCTGCATCGACGCCTGGCTCAGATCGCATTCCTCGTGTCCGTCATGCCGTCAGATTCTGGTGGTTTCTCGCTGCGACAAGTGCGGCGGGATCCCGGCTCCGGCGAGCTCCAGCTCCGATCCGCCGCCGCCGGACTCCGAGGCCAGATTTAAGGGAAGGGAGGACGACGCCAATAGGTTTTTGCCTTAG
Predicted protein sequences of Glyma04g01680
>Glyma04g01680.1   sequence type=predicted peptide   gene model=Glyma04g01680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRALRYLGERNSSTDSAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRLSSSATTPQSPTSAANKGVKKKVLRSLPKLTATAESAVKFADCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPASSSSDPPPPDSEARFKGREDDANRFLP*






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