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Report for Sequence Feature Glyma04g01670

Feature Type:gene_model
Chromosome:Gm04
Start:1116971
stop:1119676
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20830AT Annotation by Michelle Graham. TAIR10: multiple chloroplast division site 1 | chr1:7242933-7244736 FORWARD LENGTH=349 SoyBaseE_val: 6.00E-111ISS
GO:0010020GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast fission SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR19211Panther ATP-BINDING TRANSPORT PROTEIN-RELATED JGI ISS
PTHR19211:SF28Panther gb def: abc transport system atp-binding protein [campylobacter jejuni] JGI ISS
UniRef100_I1JSS0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSS0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9LM68UniRef Annotation by Michelle Graham. Most informative UniRef hit: F2D10.35 n=1 Tax=Arabidopsis thaliana RepID=Q9LM68_ARATH SoyBaseE_val: 3.00E-108ISS

Expression Patterns of Glyma04g01670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01670
ParalogEvidenceComments
Glyma06g01760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g015100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g01670
>Glyma04g01670.1   sequence type=CDS   gene model=Glyma04g01670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTGTTTGGACACTGCACTTTCGCTCGCTTTCTCTTCGTCCATGCCTCTACATTAGTCGCAGTAACAGTAGCACTGCCACTAGAAATTGCATTAGCATCAGAAATGGAATCTCCAATTGGCGCTCTGGCACCCAACAACTCAAACACGATTCCATCAATTCCATTACCAAATTTCACCATCAACTCGTTAATTCCGTCGCCATTCCTCCCTTTCTGTTGAATCGAAACGGTGGAGGCAATTTTCCTATTTGGGTATGTGTTGCGGTTGTGGTTTTGGTTGTAGCGGTGAGAGTGAGGGTAGTTTCCAGAAAAAAGGAGCGTCCTGGTTCCGTGGCTGATCTAGTAAGACGTGGCCAACTTAGATCTGATAGAAGAGGCATTTCGAGGCCTCTCAAGTATGAAGACCCCTTCAATAATCCCTTCGTCAAGGTTGGTAAAAGTGACTCAACTGTTGAGATGTGCGGAAAGGTTTACCGTTTAGCCCCTGTTACTCTTACTCAAGAGCAACAGGCTACTCACCAGAAGAGGAGATTGCGGGCCTACCAGTGGAAGCGACCCACCATCTTCCTTAGAGAAGGGGACTTGGTTCCTCCGGATGTTGATCCTGACACTGTCAGGTGGATTCCAGCTAATCATCCCTTTGCTACCACTGCCACTGATTTGGATGAGGACTTGGCACAAAACAATGTGTATCAAAAGCATGGAGTTCCTTTTCGGATTCAAGCCGAACACGAGGCCCTGCAGAAAAAGCTCGAAGCCCTACAAAATGACCAGAAACTGAATAAACTAGTGATAGATCCTATCAATGCTAAAGAATTTGAGAGGCCATTCAACTCCCACGCCAGATTAAATGATCAAGCAGATAAGAGCTCTGTAAACAATCAGGAGCAGAAACACAATAAACTAGTGATAGATCCTATTGATGCTAAAGAAATTGAGAGACCATTCAACTCCGACACCAGATTAAATGATCAAGCCGAAAAGAGCTCTGTAAACAATCAGGCGAGTGCTTCTGACTCCCCAAGAGTAGATAGTGGCCCAAATCACTTTGATAGTACATCATCAGAAGATTCAAGTTAA
Predicted protein sequences of Glyma04g01670
>Glyma04g01670.1   sequence type=predicted peptide   gene model=Glyma04g01670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVWTLHFRSLSLRPCLYISRSNSSTATRNCISIRNGISNWRSGTQQLKHDSINSITKFHHQLVNSVAIPPFLLNRNGGGNFPIWVCVAVVVLVVAVRVRVVSRKKERPGSVADLVRRGQLRSDRRGISRPLKYEDPFNNPFVKVGKSDSTVEMCGKVYRLAPVTLTQEQQATHQKRRLRAYQWKRPTIFLREGDLVPPDVDPDTVRWIPANHPFATTATDLDEDLAQNNVYQKHGVPFRIQAEHEALQKKLEALQNDQKLNKLVIDPINAKEFERPFNSHARLNDQADKSSVNNQEQKHNKLVIDPIDAKEIERPFNSDTRLNDQAEKSSVNNQASASDSPRVDSGPNHFDSTSSEDSS*






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