Glyma04g01660 - SoyBase

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Report for Sequence Feature Glyma04g01660

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1109642
stop:	1115126
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35300	AT	Annotation by Michelle Graham. TAIR10: tonoplast monosaccharide transporter2 \| chr4:16796432-16799071 REVERSE LENGTH=739	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005337	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG0569	KOG	Permease of the major facilitator superfamily	JGI		ISS
PTHR24063	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24063:SF85	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00083	PFAM	Sugar (and other) transporter	JGI		ISS
UniRef100_B9R8S3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9R8S3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JSR9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSR9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01660

Paralog	Evidence	Comments
Glyma06g01750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g015000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01660

Limit To All Plant Sequences

>Glyma04g01660.1   sequence type=CDS   gene model=Glyma04g01660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGTGCCGTCCTCGTCGCCATTGCCGCTTCCATCGGCAATTTCCTCCAGGGATGGGATAATGCTACCATCGCCGGGGCCATTGTTTACATTAAGAAAGACCTTGCGTTGCAAACAACTATGGAAGGGCTTGTGGTGGCCATGTCCCTGATTGGAGCAACGGTAATCACCACATGCTCTGGTCCTATAGCGGATTGGCTCGGTCGGCGACCCATGATGATAATCTCATCTGTGCTCTATTTCTTGGGTGGTTTGGTGATGCTGTGGTCCCCAAATGTGTATGTGTTGTGCTTGGCGAGGCTACTTGATGGATTTGGGATTGGCCTTGCTGTGACTCTTGTCCCGGTCTATATATCTGAAACGGCGCCGTCTGAAATAAGGGGGTCGTTGAATACGCTTCCTCAGTTCAGTGGCTCTGGAGGAATGTTTTTGTCGTACTGTATGGTTTTTGGCATGTCATTGAGTCCCGCGCCTAGCTGGAGGCTCATGCTTGGGGTTCTGTCTATTCCTTCTCTCTTGTATTTTGCATTGACCATTTTTTTCTTGCCCGAGTCTCCTCGGTGGCTGGTCAGCAAAGGAAGGATGCTCGAGGCTAAGAAGGTGCTCCAAAGATTGCGCGGAAGGGAGGATGTGTCAGGCGAGATGGCATTGCTGGTTGAAGGTCTCGGGATTGGGGGTGATACATCTATCGAAGAGTACATAATTGGCCCTGCTGACGAGGTGGCTGATGGTCATGAACATGCAACAGAGAAAGATAAAATTCGATTATATGGATCCCAAGCAGGCCTTTCTTGGTTAGCAAAACCTGTCACTGGACAGAGTTCTATTGGCCTTGCGTCACGCCATGGAAGCATCATCAACCAAAGCATGCCCCTCATGGATCCTCTGGTGACACTGTTTGGTAGCATTCATGAGAAGCTCCCCGAGACAGGAGCAGGAGGAAGCATGCGAAGCACTCTGTTTCCAAATTTTGGAAGCATGTTCAGCACTGCTGAGCCGCATGCTAAAAATGAACAGTGGGATGAAGAGAGCTTACAAAGGGAAGGTGAGGACTACATGTCAGATGCAGCCGGTGGGGACTCTGATGATAATTTGCACAGTCCTTTAATCTCACGCCAAACAACAAGCCTTGAAAAAGACTTGCCTCCTCCTCCTCCTTCCCATGGCAGTATCCTTGGCAGCATGAGGCGTCACAGTAGTCTCATGCAAGGGTCAGGTGAGCAAGGTGGTAGTACAGGTATTGGTGGTGGCTGGCAACTGGCATGGAAATGGACTGATAAAGGTGAGGATGGAAAACAACAAGGAGGGTTTAAAAGGATTTATTTACATGAGGAGGGAGTTTCTGCATCTCGTCGTGGATCCATTGTATCGATTCCCGGTGAAGGCGAATTTGTCCAGGCTGCTGCCTTGGTAAGCCAACCCGCTCTTTACTCCAAGGAGCTTATTGATGGACACCCAGTTGGGCCTGCAATGGTTCACCCATCTGAGACAGCTTCAAAGGGGCCAAGTTGGAAAGCTCTTCTTGAACCAGGGGTTAAGCATGCATTGGTTGTTGGAGTTGGAATACAAATACTTCAGCAGTTTTCAGGGATAAATGGGGTTCTATATTACACACCTCAAATCCTTGAAGAGGCCGGTGTTGAAGTTCTTCTTTCAGATATAGGCATTGGCTCAGAGTCGGCATCATTCCTTATCAGTGCTTTCACAACCTTCTTGATGCTTCCCTGTATAGGCGTAGCCATGAAGCTCATGGATGTTTCAGGCAGAAGGCAGTTGTTACTTACTACAATCCCCGTGCTGATTGGGTCACTCATTATTTTGGTCATTGGAAGCCTGGTAAATTTTGGCAATGTCGCCCATGCAGCAATCTCAACAGTATGCGTTGTGGTTTATTTCTGCTGCTTTGTGATGGGTTATGGACCAATTCCAAACATCCTTTGCTCAGAGATTTTCCCCACTAGGGTGCGTGGCCTCTGCATTGCTATCTGTGCATTAGTGTTCTGGATTGGAGACATCATCATCACATACTCGCTGCCTGTGATGCTGGGCTCTTTAGGACTTGGTGGTGTATTCGCCATTTACGCAGTTGTTTGTTTCATCTCGTGGATATTTGTGTTTTTGAAGGTTCCAGAAACAAAGGGCATGCCCCTTGAAGTCATCTCTGAATTCTTTTCTGTTGGAGCAAAGCAGGCTGCTTCTGCCAAGAATGAGTGA

Predicted protein sequences of Glyma04g01660

Limit To All Plant Sequences

>Glyma04g01660.1   sequence type=predicted peptide   gene model=Glyma04g01660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGAVLVAIAASIGNFLQGWDNATIAGAIVYIKKDLALQTTMEGLVVAMSLIGATVITTCSGPIADWLGRRPMMIISSVLYFLGGLVMLWSPNVYVLCLARLLDGFGIGLAVTLVPVYISETAPSEIRGSLNTLPQFSGSGGMFLSYCMVFGMSLSPAPSWRLMLGVLSIPSLLYFALTIFFLPESPRWLVSKGRMLEAKKVLQRLRGREDVSGEMALLVEGLGIGGDTSIEEYIIGPADEVADGHEHATEKDKIRLYGSQAGLSWLAKPVTGQSSIGLASRHGSIINQSMPLMDPLVTLFGSIHEKLPETGAGGSMRSTLFPNFGSMFSTAEPHAKNEQWDEESLQREGEDYMSDAAGGDSDDNLHSPLISRQTTSLEKDLPPPPPSHGSILGSMRRHSSLMQGSGEQGGSTGIGGGWQLAWKWTDKGEDGKQQGGFKRIYLHEEGVSASRRGSIVSIPGEGEFVQAAALVSQPALYSKELIDGHPVGPAMVHPSETASKGPSWKALLEPGVKHALVVGVGIQILQQFSGINGVLYYTPQILEEAGVEVLLSDIGIGSESASFLISAFTTFLMLPCIGVAMKLMDVSGRRQLLLTTIPVLIGSLIILVIGSLVNFGNVAHAAISTVCVVVYFCCFVMGYGPIPNILCSEIFPTRVRGLCIAICALVFWIGDIIITYSLPVMLGSLGLGGVFAIYAVVCFISWIFVFLKVPETKGMPLEVISEFFSVGAKQAASAKNE*

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