Glyma04g01620 - SoyBase

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Report for Sequence Feature Glyma04g01620

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1080093
stop:	1084217
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33620	AT	Annotation by Michelle Graham. TAIR10: AT hook motif DNA-binding family protein \| chr2:14234749-14236563 FORWARD LENGTH=351	SoyBase	E_val: 8.00E-74	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0048438	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral whorl development	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_B9R8T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8T3_RICCO	SoyBase	E_val: 1.00E-74	ISS
UniRef100_UPI000233A6A2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A6A2 related cluster n=1 Tax=unknown RepID=UPI000233A6A2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01620

Paralog	Evidence	Comments
Glyma06g01700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g014600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01620

Limit To All Plant Sequences

>Glyma04g01620.3   sequence type=transcript   gene model=Glyma04g01620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCTCCTCAAGTAAAACCTGTAATTTCATCCAATTTGTGAAGTTTTTTTTTTACTGCTTGGCTGGATTGCAGAAACTAGGGTTTTTGGATTTTGTCTCTTGTTTTCCCTCTTTCCTTTGGCGTTTAGATTTTGGGAGGGAGCGAGGTAAAAAAATTTGCAATCACAGAAGGAGAGTAAAAGGATGCGTGGGTTTCATTTATGAATGAATGGTAGTAGATTTTGAAATTTGAATTTGAATTGTAGACGTACGATGAGAGTAAAAAAAGGAAAGATGATGATTGTATTGCGGCGTGTAGAGAGAGGATTTGTTCAATTCCAAATATGATACTAACTCATAGTTTCAGTACCATAGTAGGATCAGGCTAGGGTTTTATAATAAGCTGCTGAAACAAATGTTCAAATTGCAGTTGTTGTTATTGTTGTTGAATCTGCCGCACCAGACACCGATTCATTCGACCAAAACATAAGCATGTCGGGATCTGACATGGCAAGCAGGGAGCAATTCACGGTTGGGATGCACAAACCCCAACCCCAACCCCAACAACAACAACCTCAGCTTCATCAAAACAACATGCGTATGGACTATGCTGCTGCTGACGGCACCGCTGTTTTCGCCCCTCCTACCGTTACCGTTAACATTAACGGCGGAGAATCCTCTCCGGCGGTGCCTCCGGGCCTGGGCCTGGCCCAGCCCCAGCCCCAGCCCCAGCCCATGATGGTTAACTCCTCCGAACCAATCAAGAGAAAGAGGGGAAGGCCCAGGAAATATGGGCCTCACGGTGGCATGGCCTTGGCTTTGAACACCACCACTCCTCCTGGCGGCGCCGCCGTGCCGGTTGGCCAGTCCGGTGGGGCATTTCCACCGGCTCCTCTTTCGGATTCGGCCTCAGCTGGTATCGTGAAGCGCAGGGGCAGACCTCGTGGTTCTGTCAACAAGAATAAGAAGAATAACAGCTCTAAGTATTCTGGGCCAGGATCTTGGTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGACAATTTCCCAGAGTAGTTCAAGAAATATTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGAGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCACTTGGAGGTTCTTTTTTTCTTGCTGGAACTGAAAGGGCTGGGGGGCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTCTTGGGCGGTGGAGTTGCAGGTCTTTTGGTAGCTGCTTCCCCTGTTCAGATTGTTTTGGCAAGCTTTGTTTCTGATGTACGCAAGCACTTCAAGCATGCAAAGCAGATGCAGAATGCAAAGGTTTCCATAGCAGCAGGCCAAAGCAGCTCACCATCAAGAGGCACTCTCAGTGAGTCTTCAGGTGGGGTTGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGCCTGCAACAACACCATGAACAACTGTACCACCCCAACACAAAGCTTTCAAGGCATGCCCTGGAAGTAGAACTTGACTCACCTCACATGTTTGTGTAGTAGGTTTGGTGTGGTGAAAGACACATCAGGCTCTACTTGTTATGCTATTACTTTGTGTCTTTTATCCTTTAAGCATTGAGGATGCACACCTGTTATATTAGCTTTATGTAATATTAGTTGGAGGAACAACATTTCAGGGATAAAGTACTTGGTCTCGTAGCTTAGTTTGGTTAGATATTGTGTTCACTTGGGTGATTCAAGAGGTTCTGGCAGAACCGGGTTGTGTTCTAGGAGCATGCAGGATCATTATGATGAGATGGCGGTGACTTTGTCATCCGTTAGTTGTAATTTGTTGGTTGTCCATGTGCCGAAACTTTCTCCTTGTTACCCAGTTGTTTGGTGGTAATAATCTGTTTATCCTTTCATCCGTTAGGTTGTTATTGTTAAATCTATCATGATTGGCAAACACTTTTCTGCAAAAAATTACTAAAAC

Coding sequences of Glyma04g01620

Limit To All Plant Sequences

>Glyma04g01620.2   sequence type=CDS   gene model=Glyma04g01620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGATCTGACATGGCAAGCAGGGAGCAATTCACGGTTGGGATGCACAAACCCCAACCCCAACCCCAACAACAACAACCTCAGCTTCATCAAAACAACATGCGTATGGACTATGCTGCTGCTGACGGCACCGCTGTTTTCGCCCCTCCTACCGTTACCGTTAACATTAACGGCGGAGAATCCTCTCCGGCGGTGCCTCCGGGCCTGGGCCTGGCCCAGCCCCAGCCCCAGCCCCAGCCCATGATGGTTAACTCCTCCGAACCAATCAAGAGAAAGAGGGGAAGGCCCAGGAAATATGGGCCTCACGGTGGCATGGCCTTGGCTTTGAACACCACCACTCCTCCTGGCGGCGCCGCCGTGCCGGTTGGCCAGTCCGGTGGGGCATTTCCACCGGCTCCTCTTTCGGATTCGGCCTCAGCTGGTATCGTGAAGCGCAGGGGCAGACCTCGTGGTTCTGTCAACAAGAATAAGAAGAATAACAGCTCTAAGTATTCTGGGCCAGGATCTTGGTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGACAATTTCCCAGAGTAGTTCAAGAAATATTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGAGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCACTTGGAGGTTCTTTTTTTCTTGCTGGAACTGAAAGGGCTGGGGGGCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTCTTGGGCGGTGGAGTTGCAGGTCTTTTGGTAGCTGCTTCCCCTGTTCAGATTGTTTTGGCAAGCTTTGTTTCTGATGTACGCAAGCACTTCAAGCATGCAAAGCAGATGCAGAATGCAAAGGTTTCCATAGCAGCAGGCCAAAGCAGCTCACCATCAAGAGGCACTCTCAGTGAGTCTTCAGGTGGGGTTGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGCCTGCAACAACACCATGAACAACTGTACCACCCCAACACAAAGCTTTCAAGGCATGCCCTGGAAGTAG

>Glyma04g01620.3   sequence type=CDS   gene model=Glyma04g01620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGATCTGACATGGCAAGCAGGGAGCAATTCACGGTTGGGATGCACAAACCCCAACCCCAACCCCAACAACAACAACCTCAGCTTCATCAAAACAACATGCGTATGGACTATGCTGCTGCTGACGGCACCGCTGTTTTCGCCCCTCCTACCGTTACCGTTAACATTAACGGCGGAGAATCCTCTCCGGCGGTGCCTCCGGGCCTGGGCCTGGCCCAGCCCCAGCCCCAGCCCCAGCCCATGATGGTTAACTCCTCCGAACCAATCAAGAGAAAGAGGGGAAGGCCCAGGAAATATGGGCCTCACGGTGGCATGGCCTTGGCTTTGAACACCACCACTCCTCCTGGCGGCGCCGCCGTGCCGGTTGGCCAGTCCGGTGGGGCATTTCCACCGGCTCCTCTTTCGGATTCGGCCTCAGCTGGTATCGTGAAGCGCAGGGGCAGACCTCGTGGTTCTGTCAACAAGAATAAGAAGAATAACAGCTCTAAGTATTCTGGGCCAGGATCTTGGTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGACAATTTCCCAGAGTAGTTCAAGAAATATTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGAGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCACTTGGAGGTTCTTTTTTTCTTGCTGGAACTGAAAGGGCTGGGGGGCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTCTTGGGCGGTGGAGTTGCAGGTCTTTTGGTAGCTGCTTCCCCTGTTCAGATTGTTTTGGCAAGCTTTGTTTCTGATGTACGCAAGCACTTCAAGCATGCAAAGCAGATGCAGAATGCAAAGGTTTCCATAGCAGCAGGCCAAAGCAGCTCACCATCAAGAGGCACTCTCAGTGAGTCTTCAGGTGGGGTTGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGCCTGCAACAACACCATGAACAACTGTACCACCCCAACACAAAGCTTTCAAGGCATGCCCTGGAAGTAG

Predicted protein sequences of Glyma04g01620

Limit To All Plant Sequences

>Glyma04g01620.2   sequence type=predicted peptide   gene model=Glyma04g01620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGSDMASREQFTVGMHKPQPQPQQQQPQLHQNNMRMDYAAADGTAVFAPPTVTVNINGGESSPAVPPGLGLAQPQPQPQPMMVNSSEPIKRKRGRPRKYGPHGGMALALNTTTPPGGAAVPVGQSGGAFPPAPLSDSASAGIVKRRGRPRGSVNKNKKNNSSKYSGPGSWFTPHVITVKAGEDLSARIMTISQSSSRNICILTANGAISNVTLRQPASSGGTVTYEGRFEILSLGGSFFLAGTERAGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDVRKHFKHAKQMQNAKVSIAAGQSSSPSRGTLSESSGGVGSGSPLNQSTGACNNTMNNCTTPTQSFQGMPWK*

>Glyma04g01620.3   sequence type=predicted peptide   gene model=Glyma04g01620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGSDMASREQFTVGMHKPQPQPQQQQPQLHQNNMRMDYAAADGTAVFAPPTVTVNINGGESSPAVPPGLGLAQPQPQPQPMMVNSSEPIKRKRGRPRKYGPHGGMALALNTTTPPGGAAVPVGQSGGAFPPAPLSDSASAGIVKRRGRPRGSVNKNKKNNSSKYSGPGSWFTPHVITVKAGEDLSARIMTISQSSSRNICILTANGAISNVTLRQPASSGGTVTYEGRFEILSLGGSFFLAGTERAGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDVRKHFKHAKQMQNAKVSIAAGQSSSPSRGTLSESSGGVGSGSPLNQSTGACNNTMNNCTTPTQSFQGMPWK*

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