Glyma04g01600 - SoyBase

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Report for Sequence Feature Glyma04g01600

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1070380
stop:	1074196
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33610	AT	Annotation by Michelle Graham. TAIR10: switch subunit 3 \| chr2:14229023-14231149 FORWARD LENGTH=469	SoyBase	E_val: 2.00E-158	ISS
GO:0006338	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin remodeling	SoyBase	N/A	ISS
GO:0040029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016514	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SWI/SNF complex	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1279	KOG	Chromatin remodeling factor subunit and related transcription factors	JGI		ISS
PTHR12802	Panther	SWI/SNF COMPLEX-RELATED	JGI		ISS
PTHR12802:SF2	Panther	gb def: putative transcriptional regulatory protein [arabidopsis thaliana]	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
PF04433	PFAM	SWIRM domain	JGI		ISS
UniRef100_G7J6G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SWI/SNF complex subunit SMARCC2 n=1 Tax=Medicago truncatula RepID=G7J6G8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JSR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSR1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01600

Paralog	Evidence	Comments
Glyma06g01680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g014400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01600

Limit To All Plant Sequences

>Glyma04g01600.2   sequence type=transcript   gene model=Glyma04g01600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGAGAACGCGTTATTTCAGTTTACATGTTTATTTATTTCTTAAGATCCGTTGCAATTTCTGAATGATCCAAAATCACATACACCATACGTAATTCATATTTCGAAGGTGTGCTTGTAATAAGTGTCCAGTGCTAAATTCATGGCCACCGCCGCCACCGAACCTCTCCCTTCCACCACCGAAACGCCTCCGGCACCGCCTCCACCGAAGCAACCCCCGCCTCCCGCGCCGCAACCTCCGGCGGCGGCGGCGGCGGCGGCAGTGAAGCCGGAGGCTCCATTGCCCGATTCGAAAACTTCGGCGGAGGCGAACGTAATCGTGGTGCCGAGCTACTCTCGGTGGTTCTCGTGGGATTCGATTGACGAATGCGAGGCGCGTCACCTCCCTGAGTTCTTCGAATCGGCGTCCAAGAGCCCTAGGGTTTACAAGTACTACAGGAACTCCATCGTGAAGTACTTCAGGTACAATCCCACCCGCAAAATCACCTTCACCGATGTCCGCAAAACCCTCGTCGGAGACGTCGGTTCCATCCGCAGAGTCTTCGATTTCCTCGAAACTTGGGGTCTCATCAATTACCACCCCTCTTCGTCGCTCACCAAACCCTTGAAGTGGGACGACAAAGAGACCAAATCCGATTCTGCATCCAACTCCACCGAATCTTCTTCCGCTCCCGTCAAAGAAAACACTAAGAGACTCTGCAGTGGCTGCAAAGTCGTTTGTACCATTGCTTGTTTTGCCTGTGACAAGTATGATTTGACACTTTGTGCGAGGTGTTATGTTCGTGGCAATTATCGAGTTGGTGTGAACTCTTCGGATTTTAGGCGAGTGGAGATAAGTGAGGAGACAAAGACGGATTGGAGTGAAAAGGAGATCACGAATCTTCTGGAAGCTATTTCGCATTACGGTGATGATTGGAAGAGGGTTTCTCAGCATGTTCCTGGCAGAACTGAGAAGGAGTGTGTTGCTCATTTTCTGAAGCTTCCTTTTGCGAATCAATTCCAGCATTATCAACAACACCCTGCTGTCAATGGCACAGATGACGGTTGTAATCTGTTAAAGATGGTAACTAATGCTGATGCTGAATCTGAATTGGATACTGTTGCCTCTGCTGAACCCAGTAAGAGAATGCGTCTCACGCCTCTTGCAGATGCAAGCAATCCCATTATGGCTCAGGCTGCTTTCCTGTCTGCTTTGGCTGGGTCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCATTGACAACTCTGTCTGAGGTTTACAAAGCAACTAAAATAAATTATCGGGCGTTTCCAAGGAATACATTGCTGCAAGATTCATTTCAAGGATCTCGATTGCATGCAAACATACAGCTTGAGAAGGAAGAGTTAGATGTGGAAAAAGCAATTTCTGAGATTATAGAAGTTCAGATGAAAAATATCCAAGATAAGCTTGTTCATTTTGAAGATTTGGACCTGCTGATGGAAAAAGAAGGCCAGCAGATGGAGCAAATGAAAAATATGTTTTTCCTTGATCAGCTTACTCTTTTATTTCATAAATCATCTGCACCAAAAACTGGAGAATGACAAGAAGGCAATAATGTAAAGACGAACCATGGCTGACTACTCTTAATTAGCTAGTGATCTTAGGCTTAGCGAATGTATTCAATTATCCTGCTCTCTCCATTTGTTTTGGCCACGAGTCACTGGACTATTAGTTCAATATCATACAACTCCATCTTGATGTAGAGCGTCTTTTAACTTTTTTTTTTATAACCAATTGTACATGCATTTCTAGAGTAATGCGTTGTCTGTATTTGTAGATAAAATGTGATTTTTTTTTCCAAACATACACAAAAAATTAATTATTTACCAAAACATACATATTCTTCCATTATTTACCAAAACATACATGTTTACTATGTTTAT

Coding sequences of Glyma04g01600

Limit To All Plant Sequences

>Glyma04g01600.1   sequence type=CDS   gene model=Glyma04g01600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGCCGCCACCGAACCTCTCCCTTCCACCACCGAAACGCCTCCGGCACCGCCTCCACCGAAGCAACCCCCGCCTCCCGCGCCGCAACCTCCGGCGGCGGCGGCGGCGGCGGCAGTGAAGCCGGAGGCTCCATTGCCCGATTCGAAAACTTCGGCGGAGGCGAACGTAATCGTGGTGCCGAGCTACTCTCGGTGGTTCTCGTGGGATTCGATTGACGAATGCGAGGCGCGTCACCTCCCTGAGTTCTTCGAATCGGCGTCCAAGAGCCCTAGGGTTTACAAGTACTACAGGAACTCCATCGTGAAGTACTTCAGGTACAATCCCACCCGCAAAATCACCTTCACCGATGTCCGCAAAACCCTCGTCGGAGACGTCGGTTCCATCCGCAGAGTCTTCGATTTCCTCGAAACTTGGGGTCTCATCAATTACCACCCCTCTTCGTCGCTCACCAAACCCTTGAAGTGGGACGACAAAGAGACCAAATCCGATTCTGCATCCAACTCCACCGAATCTTCTTCCGCTCCCGTCAAAGAAAACACTAAGAGACTCTGCAGTGGCTGCAAAGTCGTTTGTACCATTGCTTGTTTTGCCTGTGACAAGTATGATTTGACACTTTGTGCGAGGTGTTATGTTCGTGGCAATTATCGAGTTGGTGTGAACTCTTCGGATTTTAGGCGAGTGGAGATAAGTGAGGAGACAAAGACGGATTGGAGTGAAAAGGAGATCACGAATCTTCTGGAAGCTATTTCGCATTACGGTGATGATTGGAAGAGGGTTTCTCAGCATGTTCCTGGCAGAACTGAGAAGGAGTGTGTTGCTCATTTTCTGAAGCTTCCTTTTGCGAATCAATTCCAGCATTATCAACAACACCCTGCTGTCAATGGCACAGATGACGGTTGTAATCTGTTAAAGATGGTAACTAATGCTGATGCTGAATCTGAATTGGATACTGTTGCCTCTGCTGAACCCAGTAAGAGAATGCGTCTCACGCCTCTTGCAGATGCAAGCAATCCCATTATGGCTCAGGCTGCTTTCCTGTCTGCTTTGGCTGGGTCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCATTGACAACTCTGTCTGAGGTTTACAAAGCAACTAAAATAAATTATCGGGCGTTTCCAAGGAATACATTGCTGCAAGATGCTGGTATCACGTCTAACGGTGGTAATACTTCAGATTCATTTCAAGGATCTCGATTGCATGCAAACATACAGCTTGAGAAGGAAGAGTTAGATGTGGAAAAAGCAATTTCTGAGATTATAGAAGTTCAGATGAAAAATATCCAAGATAAGCTTGTTCATTTTGAAGATTTGGACCTGCTGATGGAAAAAGAAGGCCAGCAGATGGAGCAAATGAAAAATATGTTTTTCCTTGATCAGCTTACTCTTTTATTTCATAAATCATCTGCACCAAAAACTGGAGAATGA

>Glyma04g01600.2   sequence type=CDS   gene model=Glyma04g01600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGCCGCCACCGAACCTCTCCCTTCCACCACCGAAACGCCTCCGGCACCGCCTCCACCGAAGCAACCCCCGCCTCCCGCGCCGCAACCTCCGGCGGCGGCGGCGGCGGCGGCAGTGAAGCCGGAGGCTCCATTGCCCGATTCGAAAACTTCGGCGGAGGCGAACGTAATCGTGGTGCCGAGCTACTCTCGGTGGTTCTCGTGGGATTCGATTGACGAATGCGAGGCGCGTCACCTCCCTGAGTTCTTCGAATCGGCGTCCAAGAGCCCTAGGGTTTACAAGTACTACAGGAACTCCATCGTGAAGTACTTCAGGTACAATCCCACCCGCAAAATCACCTTCACCGATGTCCGCAAAACCCTCGTCGGAGACGTCGGTTCCATCCGCAGAGTCTTCGATTTCCTCGAAACTTGGGGTCTCATCAATTACCACCCCTCTTCGTCGCTCACCAAACCCTTGAAGTGGGACGACAAAGAGACCAAATCCGATTCTGCATCCAACTCCACCGAATCTTCTTCCGCTCCCGTCAAAGAAAACACTAAGAGACTCTGCAGTGGCTGCAAAGTCGTTTGTACCATTGCTTGTTTTGCCTGTGACAAGTATGATTTGACACTTTGTGCGAGGTGTTATGTTCGTGGCAATTATCGAGTTGGTGTGAACTCTTCGGATTTTAGGCGAGTGGAGATAAGTGAGGAGACAAAGACGGATTGGAGTGAAAAGGAGATCACGAATCTTCTGGAAGCTATTTCGCATTACGGTGATGATTGGAAGAGGGTTTCTCAGCATGTTCCTGGCAGAACTGAGAAGGAGTGTGTTGCTCATTTTCTGAAGCTTCCTTTTGCGAATCAATTCCAGCATTATCAACAACACCCTGCTGTCAATGGCACAGATGACGGTTGTAATCTGTTAAAGATGGTAACTAATGCTGATGCTGAATCTGAATTGGATACTGTTGCCTCTGCTGAACCCAGTAAGAGAATGCGTCTCACGCCTCTTGCAGATGCAAGCAATCCCATTATGGCTCAGGCTGCTTTCCTGTCTGCTTTGGCTGGGTCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCATTGACAACTCTGTCTGAGGTTTACAAAGCAACTAAAATAAATTATCGGGCGTTTCCAAGGAATACATTGCTGCAAGATTCATTTCAAGGATCTCGATTGCATGCAAACATACAGCTTGAGAAGGAAGAGTTAGATGTGGAAAAAGCAATTTCTGAGATTATAGAAGTTCAGATGAAAAATATCCAAGATAAGCTTGTTCATTTTGAAGATTTGGACCTGCTGATGGAAAAAGAAGGCCAGCAGATGGAGCAAATGAAAAATATGTTTTTCCTTGATCAGCTTACTCTTTTATTTCATAAATCATCTGCACCAAAAACTGGAGAATGA

Predicted protein sequences of Glyma04g01600

Limit To All Plant Sequences

>Glyma04g01600.1   sequence type=predicted peptide   gene model=Glyma04g01600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAATEPLPSTTETPPAPPPPKQPPPPAPQPPAAAAAAAVKPEAPLPDSKTSAEANVIVVPSYSRWFSWDSIDECEARHLPEFFESASKSPRVYKYYRNSIVKYFRYNPTRKITFTDVRKTLVGDVGSIRRVFDFLETWGLINYHPSSSLTKPLKWDDKETKSDSASNSTESSSAPVKENTKRLCSGCKVVCTIACFACDKYDLTLCARCYVRGNYRVGVNSSDFRRVEISEETKTDWSEKEITNLLEAISHYGDDWKRVSQHVPGRTEKECVAHFLKLPFANQFQHYQQHPAVNGTDDGCNLLKMVTNADAESELDTVASAEPSKRMRLTPLADASNPIMAQAAFLSALAGSEVAQAAAQAALTTLSEVYKATKINYRAFPRNTLLQDAGITSNGGNTSDSFQGSRLHANIQLEKEELDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKEGQQMEQMKNMFFLDQLTLLFHKSSAPKTGE*

>Glyma04g01600.2   sequence type=predicted peptide   gene model=Glyma04g01600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAATEPLPSTTETPPAPPPPKQPPPPAPQPPAAAAAAAVKPEAPLPDSKTSAEANVIVVPSYSRWFSWDSIDECEARHLPEFFESASKSPRVYKYYRNSIVKYFRYNPTRKITFTDVRKTLVGDVGSIRRVFDFLETWGLINYHPSSSLTKPLKWDDKETKSDSASNSTESSSAPVKENTKRLCSGCKVVCTIACFACDKYDLTLCARCYVRGNYRVGVNSSDFRRVEISEETKTDWSEKEITNLLEAISHYGDDWKRVSQHVPGRTEKECVAHFLKLPFANQFQHYQQHPAVNGTDDGCNLLKMVTNADAESELDTVASAEPSKRMRLTPLADASNPIMAQAAFLSALAGSEVAQAAAQAALTTLSEVYKATKINYRAFPRNTLLQDSFQGSRLHANIQLEKEELDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKEGQQMEQMKNMFFLDQLTLLFHKSSAPKTGE*

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