Glyma04g01590 - SoyBase

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Report for Sequence Feature Glyma04g01590

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1062671
stop:	1067615
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76460	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:28686932-28688506 REVERSE LENGTH=285	SoyBase	E_val: 2.00E-131	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0149	KOG	Predicted RNA-binding protein SEB4 (RRM superfamily)	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF26	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J6G9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein 24-B n=1 Tax=Medicago truncatula RepID=G7J6G9_MEDTR	SoyBase	E_val: 1.00E-162	ISS
UniRef100_I1JSR0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSR0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01590

Paralog	Evidence	Comments
Glyma06g01670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g014300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01590

Limit To All Plant Sequences

>Glyma04g01590.1   sequence type=CDS   gene model=Glyma04g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATACCAAGCGATGCAGGGTCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAGTTATTGAATTCTCCGTTCGGAGACACCACCTACACCAAAGTCTTCGTCGGAGGATTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGACCAGTTCGGCGAGATTCTCGAGGCCGTCGTCATCACCGATAAGAACACCGGAAGATCCAAGGGCTACGGTTTCGTGACTTTCCGGGATCCCGAGGCCGCAAGGAGAGCGTGTGCTGATCCATCTCCTGTTATTGATGGCAGAAGGGCCAATTGTAATTTGGCTTCACTTGGTCGACCACGGCCCCCTCTGCCTTATGGACGGATCAGACCTGCCTCCCCTTATGTTGGAAGTTTGCAACCAGCTCGTGGTGCTTATGTTGGGGGTTTTGGCTACCAGCAACCAGTTTCCTACAGCTATCAACAAGGATTGGTTTACCCTCCTTATGGGTATACGTCATACGGACCTGAGTACATCTACCCACAGAGTCTGTACAACCCATATATGGGGCAACAGTACCTTCAGATATATGGAGTGCCTGGGGCAGTGAATACAACAACTATTTATCCTTATGGACAAGTGGGTCAGGCTATTACCAGCGGTCATGGTTATTCGGCTATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGATCCAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCTTCATATCCTAGTGGAATTGCTGCACCAGTTCCTGGCCAACCACAATTTATTGTTCCTGCTCCTTCTCCTCAGTTTATGCAAGGTAGTGGTCCTGACCAAACAGCTGGGTGA

Predicted protein sequences of Glyma04g01590

Limit To All Plant Sequences

>Glyma04g01590.1   sequence type=predicted peptide   gene model=Glyma04g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYQAMQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFDQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGSLQPARGAYVGGFGYQQPVSYSYQQGLVYPPYGYTSYGPEYIYPQSLYNPYMGQQYLQIYGVPGAVNTTTIYPYGQVGQAITSGHGYSAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASYPSGIAAPVPGQPQFIVPAPSPQFMQGSGPDQTAG*

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