Glyma04g01560 - SoyBase

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Report for Sequence Feature Glyma04g01560

Feature Type:	gene_model
Chromosome:	Gm04
Start:	1037455
stop:	1046372
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76510	AT	Annotation by Michelle Graham. TAIR10: ARID/BRIGHT DNA-binding domain-containing protein \| chr1:28708927-28712498 REVERSE LENGTH=434	SoyBase	E_val: 1.00E-151	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG2744	KOG	DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain	JGI		ISS
PTHR15348	Panther	DEAD RINGER RELATED	JGI		ISS
PF01388	PFAM	ARID/BRIGHT DNA binding domain	JGI		ISS
UniRef100_G3M3K3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ARID and Hsp20 domains containing protein n=1 Tax=Lotus japonicus RepID=G3M3K3_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A209	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A209 related cluster n=1 Tax=unknown RepID=UPI000233A209	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01560

Paralog	Evidence	Comments
Glyma06g01640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g014100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01560

Limit To All Plant Sequences

>Glyma04g01560.1   sequence type=CDS   gene model=Glyma04g01560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATGATGAGAAACCCACGGGTAACTCCCATGGCATTGCTGATATGGATGTTGCTGATGCTGCTTTGCAAGGCCAACGTGTTGCTTCTTCCCCTGCTCCGCTACAACAGGATCAAGTAATGGTCGAACAGGGTCATGATATCAAAAACGGCGATTCTGGTCCTGCTCATTTGCCAGAAGCCAGTGTAATTAACAATAATCAGTTTGAAGTTGAAGATGCTCAGACCGTTTCGCATCAGGAACTGACCACTCCAAAGCCTAAAGAAAAAAACGTCAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGACTGATTATGATGAGTATGGCACGCCTCTGGATCGAGAAACATTCATGAAAGAGCTTGAGACTTTCTACAGAGAGCGCTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTCAATTGCCTTAAGTTGTGGAGAGCTGTTATCAGACTAGGCGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCAAAGACCTGCACTACAGTCTCATGGACATTTAGAATTTTTTATGAGAAGGCACTTTTAGAGTATGAAAGGCATAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTTGGACCATTCCATCAATCTTCAAATGTGGAAAAAGAGCCTGCTGTTTACCAGACTCCAGGCTCAGGTAGAGCAAGAAGGGATTCCGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACACAAAAGCGTGAAAAGAACCTAAAAAGTATTGGTATGATCAATAAACAGAGGACACTGTCTGGTCTGGAGCATGCTGAGAAATCTGCAAATATTGAAGGAGATCAACAATTGGTCACAGCGGTAGTGGACGTTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATGGTTTTGAGGTGTATGCCCTTGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCGGTTGGACGTCTTGTTATAACTGGTGTGCCAGAACACCTTGACAATCCATGGGGAATTACCCCCTTCAAAAAGGTTGTGAACTTACCTACAAGAATTGATTCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTGTGA

Predicted protein sequences of Glyma04g01560

Limit To All Plant Sequences

>Glyma04g01560.1   sequence type=predicted peptide   gene model=Glyma04g01560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDDEKPTGNSHGIADMDVADAALQGQRVASSPAPLQQDQVMVEQGHDIKNGDSGPAHLPEASVINNNQFEVEDAQTVSHQELTTPKPKEKNVREMKNVLNDTEMTDYDEYGTPLDRETFMKELETFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYERHKREIGELQLPVGPFHQSSNVEKEPAVYQTPGSGRARRDSAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTQKREKNLKSIGMINKQRTLSGLEHAEKSANIEGDQQLVTAVVDVGPPADWVKINVRETKDGFEVYALVPGLLREEVRVQSDPVGRLVITGVPEHLDNPWGITPFKKVVNLPTRIDSLQTSAVVSLHGRLFVRVPFEQGAV*

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