Glyma04g01520 - SoyBase

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Report for Sequence Feature Glyma04g01520

Feature Type:	gene_model
Chromosome:	Gm04
Start:	996892
stop:	999899
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46850	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233). \| chr5:19010852-19012010 FORWARD LENGTH=299	SoyBase	E_val: 2.00E-58	ISS
GO:0006506	GO-bp	Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF08320	PFAM	PIG-X / PBN1	JGI		ISS
UniRef100_G7LGX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol-glycan biosynthesis class X protein n=2 Tax=Medicago truncatula RepID=G7LGX6_MEDTR	SoyBase	E_val: 6.00E-121	ISS
UniRef100_I1JSQ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSQ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01520

Paralog	Evidence	Comments
Glyma06g01600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g013700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01520

Limit To All Plant Sequences

>Glyma04g01520.1   sequence type=CDS   gene model=Glyma04g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTCGGCGATGCATTCAACTCTTCATTTATTTCTTAGCTACATGCTCTTCGCTTGCCGATTCAGTTTCAAGTCCGGTGCCCGTCAACAAATTTCTGATGCAGTCCTATTACGACAGATACACGATTTTACACGATTCGGATTTTGATAATTTTATGTCTCAAGCAATCCCTTCTGGTTCTTCGTGTGGATTTGTGTTGAGATTGTCAGATTTAAAGCGCACTCTTATTGGTGAAGGTTCACATCGTAGTGTCTCTACATTAATCAAATTTCAGACCCAACAGTTAAAGTGTGAACTGTTAAGCTACTCATGTGAATTCATAATTATTGAAAGATTGCCTTCTGGAGTTTTTGCTGATCCATTTGAGTTACAACATCTTGTTCACCGTGGCATTTTCAGTGATGTAGCTGTCTTTGGTGACACAAATCTGGAGCTGCCTTCATTCTTGTCCAATCGTTCTGCTGTTGAAATTCACTTGCTTGTTGACCCAAATATATTGCAAGAGCCAACTGATATAAAAATGGAGCTTCCATTGCATGCTCGATATCAACCCCTTAATGAAAGTGGGTACTCGACGGTTGAATTTGGTGCACCGGATATGTTAGTGCGCTGCGGCACAAAAGGAAAGGTGGAAAACCACTATTGCTTCTTCAAATTGGAAAAGGATGACGCCAATCTGTATGGTCCTCATACTGTTTGGAGAATACCTTCTGGAATAAAGGCACATGCTGATCTTGTTTCTGCAGCTACATTTATTGCAGCTTTGTTATCAACTCTTGCAATTGTTGTTGCATCATTATATTATTCCAATAGCTGA

Predicted protein sequences of Glyma04g01520

Limit To All Plant Sequences

>Glyma04g01520.1   sequence type=predicted peptide   gene model=Glyma04g01520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRRCIQLFIYFLATCSSLADSVSSPVPVNKFLMQSYYDRYTILHDSDFDNFMSQAIPSGSSCGFVLRLSDLKRTLIGEGSHRSVSTLIKFQTQQLKCELLSYSCEFIIIERLPSGVFADPFELQHLVHRGIFSDVAVFGDTNLELPSFLSNRSAVEIHLLVDPNILQEPTDIKMELPLHARYQPLNESGYSTVEFGAPDMLVRCGTKGKVENHYCFFKLEKDDANLYGPHTVWRIPSGIKAHADLVSAATFIAALLSTLAIVVASLYYSNS*

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