Report for Sequence Feature Glyma04g01500
Feature Type: gene_model
Chromosome: Gm04
Start: 987904
stop: 989382
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g01500
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G49320 AT
Annotation by Michelle Graham. TAIR10: unknown seed protein like 1 | chr1:18246441-18247817 FORWARD LENGTH=280
SoyBase E_val: 3.00E-20 ISS
GO:0048316 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed development
SoyBase N/A ISS
GO:0000326 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF03181 PFAM
BURP domain
JGI ISS
UniRef100_G7J6J1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BURP domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J6J1_MEDTR
SoyBase E_val: 8.00E-78 ISS
UniRef100_I1JSP9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSP9_SOYBN
SoyBase E_val: 1.00E-145 ISS
Expression Patterns of Glyma04g01500
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g01500
Paralog Evidence Comments
Glyma06g01570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g01500 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g013500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g01500
Coding sequences of Glyma04g01500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g01500.2 sequence type=CDS gene model=Glyma04g01500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGACTTGGATTTGCTTCTTGGAGATTCATCCTATGCACCCTAGTTGTCTTTTTGATTCTACAAGACAGTGTAGCTAGAAAGATAGCTACAACATCTGGGAATGAAGTTCAACTGAAGGAAGTATCCTATGATTTGCAAAAGCTTGCAACAGAGGGTCTTGTACTTGACAGTATTATTCAGCTTGAAGGCGCTGATATAAAAAGGAAGAATAAGCATGTCCATAAAGACGAGGCTAGAGTGAAGAAAGGAATAGGATTTGACATAGAAGAAGAGGAGGATAAAAATGATCACAAAAAGATAGTTGGAAAGGATGTGCATGGTTATAAGCCATCTCATGAGGATCACAAACACATGGACCTTGAACTGAATGTGTTTTTCACCCCAAATGATTTGAAGGTTGGGAAAATAATGCCCATCTATTTTTCCAAGAAAAACTCCTCAACATCTCCAAAATTTCTGACCAGAGAAGAAGCTGATCAGATTCCTTTCTCATCAAAACACCTACCATCGCTTCTCAAATTCTTCTCCATCCCAAAACACTCTCCCCAAGCCAAGGCAATGAAATATACCCTCAAACAATGTGAATTTGAATCCATGGAAGAGAGACCAAGTTCTTTTTTTACTGGCCACAGCCAGCATAGTGACACCAATCTCTATGAGGTGATGGTAGAAGGTGAGAATGGAGGGAGAGTTCAAGCTGCAGCTATTTGCCACATGGACACCTCTAAGTGGGACCGAGACCACGTGTCCTTTCGTGTGCTCAAAGTTGAGCCGGGAACCTCACCTGTGTGTCATTTCTTCCCTCCTGATAATCTAGTCTGGGTGCCTTTGCCTCTGGCTCCATAA
Predicted protein sequences of Glyma04g01500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g01500.2 sequence type=predicted peptide gene model=Glyma04g01500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRLGFASWRFILCTLVVFLILQDSVARKIATTSGNEVQLKEVSYDLQKLATEGLVLDSIIQLEGADIKRKNKHVHKDEARVKKGIGFDIEEEEDKNDHKKIVGKDVHGYKPSHEDHKHMDLELNVFFTPNDLKVGKIMPIYFSKKNSSTSPKFLTREEADQIPFSSKHLPSLLKFFSIPKHSPQAKAMKYTLKQCEFESMEERPSSFFTGHSQHSDTNLYEVMVEGENGGRVQAAAICHMDTSKWDRDHVSFRVLKVEPGTSPVCHFFPPDNLVWVPLPLAP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
