Glyma04g01480 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g01480

Feature Type:	gene_model
Chromosome:	Gm04
Start:	972070
stop:	975675
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34440	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr4:16466008-16468748 FORWARD LENGTH=670	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0048610	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF822	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G7J6J8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7J6J8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A69F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A69F related cluster n=1 Tax=unknown RepID=UPI000233A69F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g01480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g013300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01480

Limit To All Plant Sequences

>Glyma04g01480.3   sequence type=transcript   gene model=Glyma04g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCAGGTTTGGCACCTAGCAGGGTAATTATTTGAGGGAGCGGGGTCAGGCTTAATTCTCCGGGTCTTTAACTTTAATAACTTTTGTTGGAGAAGAATTAAGACATCTAAATGGCTTCAAATTCCGATAAGGATTCCCCAACACCACCTTCACCTGATTCATCTTCATCCCAATCCCCGCCATCATCTCCTCCACCATCCCAAGATAGTTCATCGCCCCCACCATCATCTCAGGATAATTCGTCGCCGCCACCATCGTCCCCCCCGCCATCATCCCCACCACCATCATCTTCGCCTCCTCCGTCCCCGCCACCGCCGTCATCAAATGATCAGAAATCCCCGCCTCCGCCATCTGACTCATCCTCCTCCCCCCCATCTCCACCACCGCCGCCACCTCCTGATAAGGATTCAGGCAGCCACCGGTCGCCACCGCCTCCGCCACATTCAAGACATGAGTTTTCTCCTCCTCCGCCTCCGAACCACCGGTTGTCTCCACCCAAGTCGTCATCATCAGGTTCCTCGGATGGATTGAAAGACAGTGAAAGCCATTCATTGAGCATGCCAGTTATAATAGGAATTGCAGCTGGAGCTGGCATTTTGCTCCTTCTCCTTCTCGTAGTCGTTTGTGCGTGTTCAAGAAGGAAGAAGAGATCTCAGCCTTCCGTTAGTTACTACGCTAATCAACCTTCAGCATGCTGGTGGATGAATGGCTACATGCAGATGATGGATATTATAAAAGACCAAGGGGAGGTCAAAATCAGTATGGGTACAATAACAACGGCGAGCACGTTCTGAATATTCCTCCACCTCCAGGAGCAGGTTGGGGAGCAGCACCCCAACCTCCCCAGATGATTAGTAGTGACATGAGCAACTCCAGTTTCTCGGGTTCCCACGGTCCCGTTTTGCCACCTCCACACCCTACAGTGGCCCTTGGATTCAACCAAAGCTCCTTCACTTATGACGAGCTCTCAGCTGCCACCGGAGGGTTTAGCCAACGCAACTTGCTCGGTCAAGGTGGGTTCGGATATGTGCACAAAGGTGTTCTACCCAATGGTAAGGAAATTGCAGTGAAGAGCCTCAAGTCCACCGGGGGACAAGGTGACAGAGAATTCCAAGCTGAGGTTGATATTATTAGCCGTGTCCATCATCGCCATCTTGTGTCACTTGTTGGCTATTGCATGTCAGAAAGCAAAAAACTTCTGGTTTATGAGTTTGTGCCTAAAGGGACCCTTGAATTCCATCTTCATGGAAAGGGCCGACCTGTCATGGATTGGAATACCAGGCTCAAAATTGCGATTGGATCGGCCAAAGGACTTGCTTATTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCGAACATTCTACTTGAGAACAACTTCGAAGCCAAAGTGGCAGATTTTGGGTTGGCAAAGATTAGTCAAGACACTAACACTCATGTTTCTACTCGTGTAATGGGAACATTCGGTTATATGGCTCCAGAGTATGCATCAAGTGGTAAGCTAACTGACAAATCTGATGTGTTCTCGTTCGGTATTATGCTTTTGGAGCTCATAACTGGTAGGCGCCCTGTGAACAACACTGGGGAATATGAAGATACTTTGGTCGACTGGGCAAGACCACTTTGTACAAAGGCAATGGAAAATGGAACTTTTGAAGGACTAGTGGATCCACGTTTAGAGGATAATTACGACAAGCAGCAAATGGCTTCTATGGTGGCTTGTGCTGCTTTTAGCGTTAGGCACTCAGCAAAGAGGCGCCCAAGAATGAGTCAGATTGTACGAGTACTGGAGGGTGATGTGTCACTAGATGCCCTTAATCATGAGGGAGTGAAACCTGGACAAAGTTCAATGTTCAGCAGCGCGAGCAGGGAGTATGGTGCGGAGGCATACGGTGCTGACATGATGAGATTCAGGAAACTAGCATTAGATAGTGGCGTGGGAAGCAGTGAGTATGGTGGAACCAGTGAGTATGGCCTTAACCCTTCCAGCTCAAGCAGTGAACAATCATCTGCTGAATATGCCAGGAGGACCACAGGAGGAGGCCGGATGCACACTCCTTGAGAAAATTGAAATTGCATGCATGCATGTGTATGTGTGAAGAAGAAGAAATTACTACTAGTAACAGCTGATCTAGCCACATGTTTTTAATCAAGGCCATGCATGGTTGTTGCTGCAGAGAAAGAAATTACCATTCTTTTATGACTTTTTGTGATTAATTGATTGTGTAGGTTGTCAACATTGCACAGTGGAAGGGATATCTGTTGTAACATAAAATTCCAATTAGAGGAAGCTCCTCCTGTGTAAGTCTTTCGGGGATTTCGACTTGCATTTTGTGTATAATAAAAGATGAAGAAGTTGGAGGTGCATATATGAACAGTCTCTTTCGTGTTTCTTCATTGAAAGTTGCGATGATTAGTTTATAGGAAGTAACAAACAGATTCGTGGAAAATATTTGATTCTTTGTCACCAAAAAGTTTAGAGTAAAGGAAGCTAAAAATATATA

Coding sequences of Glyma04g01480

Limit To All Plant Sequences

>Glyma04g01480.2   sequence type=CDS   gene model=Glyma04g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAATTCCGATAAGGATTCCCCAACACCACCTTCACCTGATTCATCTTCATCCCAATCCCCGCCATCATCTCCTCCACCATCCCAAGATAGTTCATCGCCCCCACCATCATCTCAGGATAATTCGTCGCCGCCACCATCGTCCCCCCCGCCATCATCCCCACCACCATCATCTTCGCCTCCTCCGTCCCCGCCACCGCCGTCATCAAATGATCAGAAATCCCCGCCTCCGCCATCTGACTCATCCTCCTCCCCCCCATCTCCACCACCGCCGCCACCTCCTGATAAGGATTCAGGCAGCCACCGGTCGCCACCGCCTCCGCCACATTCAAGACATGAGTTTTCTCCTCCTCCGCCTCCGAACCACCGGTTGTCTCCACCCAAGTCGTCATCATCAGGTTCCTCGGATGGATTGAAAGACAGTGAAAGCCATTCATTGAGCATGCCAGTTATAATAGGAATTGCAGCTGGAGCTGGCATTTTGCTCCTTCTCCTTCTCGTAGTCGTTTGTGCGTGTTCAAGAAGGAAGAAGAGATCTCAGCCTTCCGTTAGTTACTACGCTAATCAACCTTCAGATGATGGATATTATAAAAGACCAAGGGGAGGTCAAAATCAGTATGGGTACAATAACAACGGCGAGCACGTTCTGAATATTCCTCCACCTCCAGGAGCAGGTTGGGGAGCAGCACCCCAACCTCCCCAGATGATTAGTAGTGACATGAGCAACTCCAGTTTCTCGGGTTCCCACGGTCCCGTTTTGCCACCTCCACACCCTACAGTGGCCCTTGGATTCAACCAAAGCTCCTTCACTTATGACGAGCTCTCAGCTGCCACCGGAGGGTTTAGCCAACGCAACTTGCTCGGTCAAGGTGGGTTCGGATATGTGCACAAAGGTGTTCTACCCAATGGTAAGGAAATTGCAGTGAAGAGCCTCAAGTCCACCGGGGGACAAGGTGACAGAGAATTCCAAGCTGAGGTTGATATTATTAGCCGTGTCCATCATCGCCATCTTGTGTCACTTGTTGGCTATTGCATGTCAGAAAGCAAAAAACTTCTGGTTTATGAGTTTGTGCCTAAAGGGACCCTTGAATTCCATCTTCATGGAAAGGGCCGACCTGTCATGGATTGGAATACCAGGCTCAAAATTGCGATTGGATCGGCCAAAGGACTTGCTTATTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCGAACATTCTACTTGAGAACAACTTCGAAGCCAAAGTGGCAGATTTTGGGTTGGCAAAGATTAGTCAAGACACTAACACTCATGTTTCTACTCGTGTAATGGGAACATTCGGTTATATGGCTCCAGAGTATGCATCAAGTGGTAAGCTAACTGACAAATCTGATGTGTTCTCGTTCGGTATTATGCTTTTGGAGCTCATAACTGGTAGGCGCCCTGTGAACAACACTGGGGAATATGAAGATACTTTGGTCGACTGGGCAAGACCACTTTGTACAAAGGCAATGGAAAATGGAACTTTTGAAGGACTAGTGGATCCACGTTTAGAGGATAATTACGACAAGCAGCAAATGGCTTCTATGGTGGCTTGTGCTGCTTTTAGCGTTAGGCACTCAGCAAAGAGGCGCCCAAGAATGAGTCAGATTGTACGAGTACTGGAGGGTGATGTGTCACTAGATGCCCTTAATCATGAGGGAGTGAAACCTGGACAAAGTTCAATGTTCAGCAGCGCGAGCAGGGAGTATGGTGCGGAGGCATACGGTGCTGACATGATGAGATTCAGGAAACTAGCATTAGATAGTGGCGTGGGAAGCAGTGAGTATGGTGGAACCAGTGAGTATGGCCTTAACCCTTCCAGCTCAAGCAGTGAACAATCATCTGCTGAATATGCCAGGAGGACCACAGGAGGAGGCCGGATGCACACTCCTTGA

>Glyma04g01480.3   sequence type=CDS   gene model=Glyma04g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGTGGATGAATGGCTACATGCAGATGATGGATATTATAAAAGACCAAGGGGAGGTCAAAATCAGTATGGGTACAATAACAACGGCGAGCACGTTCTGAATATTCCTCCACCTCCAGGAGCAGGTTGGGGAGCAGCACCCCAACCTCCCCAGATGATTAGTAGTGACATGAGCAACTCCAGTTTCTCGGGTTCCCACGGTCCCGTTTTGCCACCTCCACACCCTACAGTGGCCCTTGGATTCAACCAAAGCTCCTTCACTTATGACGAGCTCTCAGCTGCCACCGGAGGGTTTAGCCAACGCAACTTGCTCGGTCAAGGTGGGTTCGGATATGTGCACAAAGGTGTTCTACCCAATGGTAAGGAAATTGCAGTGAAGAGCCTCAAGTCCACCGGGGGACAAGGTGACAGAGAATTCCAAGCTGAGGTTGATATTATTAGCCGTGTCCATCATCGCCATCTTGTGTCACTTGTTGGCTATTGCATGTCAGAAAGCAAAAAACTTCTGGTTTATGAGTTTGTGCCTAAAGGGACCCTTGAATTCCATCTTCATGGAAAGGGCCGACCTGTCATGGATTGGAATACCAGGCTCAAAATTGCGATTGGATCGGCCAAAGGACTTGCTTATTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCGAACATTCTACTTGAGAACAACTTCGAAGCCAAAGTGGCAGATTTTGGGTTGGCAAAGATTAGTCAAGACACTAACACTCATGTTTCTACTCGTGTAATGGGAACATTCGGTTATATGGCTCCAGAGTATGCATCAAGTGGTAAGCTAACTGACAAATCTGATGTGTTCTCGTTCGGTATTATGCTTTTGGAGCTCATAACTGGTAGGCGCCCTGTGAACAACACTGGGGAATATGAAGATACTTTGGTCGACTGGGCAAGACCACTTTGTACAAAGGCAATGGAAAATGGAACTTTTGAAGGACTAGTGGATCCACGTTTAGAGGATAATTACGACAAGCAGCAAATGGCTTCTATGGTGGCTTGTGCTGCTTTTAGCGTTAGGCACTCAGCAAAGAGGCGCCCAAGAATGAGTCAGATTGTACGAGTACTGGAGGGTGATGTGTCACTAGATGCCCTTAATCATGAGGGAGTGAAACCTGGACAAAGTTCAATGTTCAGCAGCGCGAGCAGGGAGTATGGTGCGGAGGCATACGGTGCTGACATGATGAGATTCAGGAAACTAGCATTAGATAGTGGCGTGGGAAGCAGTGAGTATGGTGGAACCAGTGAGTATGGCCTTAACCCTTCCAGCTCAAGCAGTGAACAATCATCTGCTGAATATGCCAGGAGGACCACAGGAGGAGGCCGGATGCACACTCCTTGA

Predicted protein sequences of Glyma04g01480

Limit To All Plant Sequences

>Glyma04g01480.2   sequence type=predicted peptide   gene model=Glyma04g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNSDKDSPTPPSPDSSSSQSPPSSPPPSQDSSSPPPSSQDNSSPPPSSPPPSSPPPSSSPPPSPPPPSSNDQKSPPPPSDSSSSPPSPPPPPPPDKDSGSHRSPPPPPHSRHEFSPPPPPNHRLSPPKSSSSGSSDGLKDSESHSLSMPVIIGIAAGAGILLLLLLVVVCACSRRKKRSQPSVSYYANQPSDDGYYKRPRGGQNQYGYNNNGEHVLNIPPPPGAGWGAAPQPPQMISSDMSNSSFSGSHGPVLPPPHPTVALGFNQSSFTYDELSAATGGFSQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEVDIISRVHHRHLVSLVGYCMSESKKLLVYEFVPKGTLEFHLHGKGRPVMDWNTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKISQDTNTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSFGIMLLELITGRRPVNNTGEYEDTLVDWARPLCTKAMENGTFEGLVDPRLEDNYDKQQMASMVACAAFSVRHSAKRRPRMSQIVRVLEGDVSLDALNHEGVKPGQSSMFSSASREYGAEAYGADMMRFRKLALDSGVGSSEYGGTSEYGLNPSSSSSEQSSAEYARRTTGGGRMHTP*

>Glyma04g01480.3   sequence type=predicted peptide   gene model=Glyma04g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVDEWLHADDGYYKRPRGGQNQYGYNNNGEHVLNIPPPPGAGWGAAPQPPQMISSDMSNSSFSGSHGPVLPPPHPTVALGFNQSSFTYDELSAATGGFSQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEVDIISRVHHRHLVSLVGYCMSESKKLLVYEFVPKGTLEFHLHGKGRPVMDWNTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKISQDTNTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSFGIMLLELITGRRPVNNTGEYEDTLVDWARPLCTKAMENGTFEGLVDPRLEDNYDKQQMASMVACAAFSVRHSAKRRPRMSQIVRVLEGDVSLDALNHEGVKPGQSSMFSSASREYGAEAYGADMMRFRKLALDSGVGSSEYGGTSEYGLNPSSSSSEQSSAEYARRTTGGGRMHTP*

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