Glyma04g01450 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g01450

Feature Type:	gene_model
Chromosome:	Gm04
Start:	946149
stop:	951295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34480	AT	Annotation by Michelle Graham. TAIR10: O-Glycosyl hydrolases family 17 protein \| chr4:16481147-16483988 REVERSE LENGTH=504	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PTHR16631	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED	JGI		ISS
PF00332	PFAM	Glycosyl hydrolases family 17	JGI		ISS
PF07983	PFAM	X8 domain	JGI		ISS
UniRef100_G7J6K5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7J6K5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JSP4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSP4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01450

Paralog	Evidence	Comments
Glyma06g01500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g013000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g01450

Limit To All Plant Sequences

>Glyma04g01450.1   sequence type=CDS   gene model=Glyma04g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAATACACCTTCGAATTCTTCAATTCTCCTCTCCCTTTTTCTATTGGCCATCGCCCTCTCCCTCGCTGAGTCCCAATCTTTCATCGGAGTAAACTACGGCCAGGTCGCCGACAACCTTCCGGCGCCGGAGGACACGGCCAGCCTCCTCAAATCCACCACCATCGGAAAAGTCCGTCTCTACGGCGCCGATCCCGCCATCATCAAGGCCCTCGCCAACTCCGGCATCGGAATCGTCATCGGCGCCTCCAACGGCGACATTGCGAGTCTCGCCGGCGATCCCAACGCGGCCACCCAGTGGGTTAACGCGAACGTCTTGCCCTACTACCCGGCGAGCAACATCACTCTGATCACCGTCGGAAACGAGATTTTGACCTTAGCCGACCAGGGTCTTAAGTCGCAGCTCGTCCCGGCGATGCGAAATGTCCAAAATGCCCTCGGCGCGGCCTCGCTCGGCGGCAAGATCAAGGTCTCCACAGTGCACTCGATGGCCGTGTTGACTCAGTCGGACCCGCCCTCGTCCGGGTTGTTCAACCCGGCGCTGCAAGACACGCTCAAACAGCTGCTGGCGCTACTCAAGGACAACAAATCGCCGTTCACGATCAACCCGTACCCGTTTTTCGCTTACCAGAGCGACCCGAGACCTGAAACGCTGGCGTTTTGCCTCTTCCAGCCCAACTCGGGCCGGGTCGACTCGGGCAACGGGAAGCTTTACACCAACATGTTCGATGCTCAGGTTGATGCTGTACATTCTGCTTTGAGTGCCATGGGATTCCAGGACGTGGAGATTGTGGTTGCTGAGACTGGATGGCCCTCACGTGGTGACAGCAACGAATTGGGACCCAGTGTTGAAAATGCAAAGGCCTATAACGGGAACCTGATTTCTCATCTTAGATCATTGGTTGGGACACCTTTGATGCCTGGGAAGTCTGTGGACACTTACATTTTTGCACTCTATGATGAGGATCTCAAACAAGGCCCAGGATCTGAGCGTGCATTTGGTATGTTCAAAACTGATCGCACCGTGTCGTACGACGTTGGATTAACCAAGTCTAGCCAGCAGACTCCATCAACTAGTCCAACAACTCCAGCACCTAAAACTGCTGGATGGTGTATACCCAAAGCTGGAGTTTCTGATGCTCAGTTGCAGGCCAATATTGACTACGCCTGTAGCCAAGGTATAGATTGCGGGCCAATTCAACCAGGAGGCGCTTGTTTTGAGCCTAACACAGTAGCATCCCATGCTGCATATTCCATGAATCTATACTACCAAACTTCTGGCAAAAATCAATGGAACTGTGATTTCTCTCAATCAGCAACACTCACATCCCAAAATCCAAGTTACAATGCTTGCATTTACACTGGTGGGAGCACCTGA

Predicted protein sequences of Glyma04g01450

Limit To All Plant Sequences

>Glyma04g01450.1   sequence type=predicted peptide   gene model=Glyma04g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANTPSNSSILLSLFLLAIALSLAESQSFIGVNYGQVADNLPAPEDTASLLKSTTIGKVRLYGADPAIIKALANSGIGIVIGASNGDIASLAGDPNAATQWVNANVLPYYPASNITLITVGNEILTLADQGLKSQLVPAMRNVQNALGAASLGGKIKVSTVHSMAVLTQSDPPSSGLFNPALQDTLKQLLALLKDNKSPFTINPYPFFAYQSDPRPETLAFCLFQPNSGRVDSGNGKLYTNMFDAQVDAVHSALSAMGFQDVEIVVAETGWPSRGDSNELGPSVENAKAYNGNLISHLRSLVGTPLMPGKSVDTYIFALYDEDLKQGPGSERAFGMFKTDRTVSYDVGLTKSSQQTPSTSPTTPAPKTAGWCIPKAGVSDAQLQANIDYACSQGIDCGPIQPGGACFEPNTVASHAAYSMNLYYQTSGKNQWNCDFSQSATLTSQNPSYNACIYTGGST*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain