Glyma04g01390 - SoyBase

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Report for Sequence Feature Glyma04g01390

Feature Type:	gene_model
Chromosome:	Gm04
Start:	878647
stop:	880570
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21620	AT	Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein \| chr2:9248749-9249986 FORWARD LENGTH=193	SoyBase	E_val: 2.00E-85	ISS
GO:0002238	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin	SoyBase	N/A	ISS
GO:0009269	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to desiccation	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00582	PFAM	Universal stress protein family	JGI		ISS
UniRef100_D6BR58	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Response to dessication RD2 n=1 Tax=Jatropha curcas RepID=D6BR58_9ROSI	SoyBase	E_val: 3.00E-83	ISS
UniRef100_I1JSN4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSN4_SOYBN	SoyBase	E_val: 2.00E-152	ISS

Expression Patterns of Glyma04g01390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g01390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g012400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01390

Limit To All Plant Sequences

>Glyma04g01390.2   sequence type=transcript   gene model=Glyma04g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACTTATGTTTGTTTAATTGTCTTATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGGTTTGGTTCAACAATCCCTCTATCTGAAACCAGCAGTTATCATGTTACTGAAGCATCTTCTTGTGATTTTCTTCAGTGTGCTACAGGGAAGTGTTGGTGAGTACTGCTTTCACCACTGTAAAGCAGCACCTGTTGTTATTGTTCCTGGAAAAGGTGTGCCATCGTTGCCTTAGTCTTTCTTTTCAACATTTTTTTCTTGCAGCCGAATATTAAAGGAGTTTCATTTCTTTGATTCACAGAGGCTGGAGATGCGTCAATCCTCTAGTCGAATTATGTTGTAAAAGGCTGTGTTTTTATTATCGCATTTGTTTTATCGTGTGTATCTATTATCAAATACTAGTGTGAAGATTGTTTCTAATTCATTAGAACAAGAAAAAAGAGCATCACATGCTGTGATTATTAATATTCTTTTCTGGAAAGTCACAATTGATTGGTTGCCCATGTTCCCATTTTCAAAAATCTAATTGTAACTATTAATTCCA

>Glyma04g01390.3   sequence type=transcript   gene model=Glyma04g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAGAAAAAATTAAGAGAAAATAAGTATAACGATGTTTTTTTTATTTGATTGAAAAGAAAAAAAAAAAGATAAATCATAAGAAAGTTAACTTCAATAAACAAAAAAATTGCTTTTCCTGTCTATCAAAAACATACATAGGATAAATGTTTTGAGCAATACCCTTAACTGGCCAAAAAAAAAAGTAACTTATGTTTGTTTAATTGTCTTATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGTGTGCTACAGGGAAGTGTTGGTGAGTACTGCTTTCACCACTGTAAAGCAGCACCTGTTGTTATTGTTCCTGGAAAAGAGGCTGGAGATGCGTCAATCCTCTAGTCGAATTATGTTGTAAAAGGCTGTGTTTTTATTATCGCATTTGTTTTATCGTGTGTATCTATTATCAAATACTAGTGTGAAGATTGTTTCTAATTCATTAGAACAAGAAAAAAGAGCATCACATGCTGTGATTATTAATATTCTTTTCTGGAAAGTCACAATTGATTGGTTGCCCATGTTCCCATTTTCAAAAATCTAATTGTAACTATTAATTCCACCACCATGGTCTGTCTCTGTTTGCTTTTACGAGTATATTTTCCATTGGATAAAATTGGTATAAAGG

Coding sequences of Glyma04g01390

Limit To All Plant Sequences

>Glyma04g01390.1   sequence type=CDS   gene model=Glyma04g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGGTTCCTTCCTTACTTTACTTACTCCACCACTTTTTTTTTGTCTCTTATTGTGGAAATTCATTTATCTTTTCTTTAATATTTTTTCAGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGTGTGCTACAGGGAAGTGTTGGTGAGTACTGCTTTCACCACTGTAAAGCAGCACCTGTTGTTATTGTTCCTGGAAAAGAGGCTGGAGATGCGTCAATCCTCTAG

>Glyma04g01390.2   sequence type=CDS   gene model=Glyma04g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGGTTTGGTTCAACAATCCCTCTATCTGAAACCAGCAGTTATCATGTTACTGAAGCATCTTCTTGTGATTTTCTTCAGTGTGCTACAGGGAAGTGTTGGTGA

>Glyma04g01390.3   sequence type=CDS   gene model=Glyma04g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGTGTGCTACAGGGAAGTGTTGGTGAGTACTGCTTTCACCACTGTAAAGCAGCACCTGTTGTTATTGTTCCTGGAAAAGAGGCTGGAGATGCGTCAATCCTCTAG

Predicted protein sequences of Glyma04g01390

Limit To All Plant Sequences

>Glyma04g01390.1   sequence type=predicted peptide   gene model=Glyma04g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIGMETVMEEEEYNYREVRLPSLIAVVGEPELGRETGERRRGRDIIIAIDHGPNTKHAFDWALVHLCRLADTIHLVHAVSGSFLTLLTPPLFFCLLLWKFIYLFFNIFSDLHNQVVYDITQGLMEKLAIEAFQVLMVKTVARIVEGDPGKVICKEAERIKPAAVVMGTRGRSLIQSVLQGSVGEYCFHHCKAAPVVIVPGKEAGDASIL*

>Glyma04g01390.2   sequence type=predicted peptide   gene model=Glyma04g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIGMETVMEEEEYNYREVRLPSLIAVVGEPELGRETGERRRGRDIIIAIDHGPNTKHAFDWALVHLCRLADTIHLVHAVSDLHNQVVYDITQGLMEKLAIEAFQVLMVKTVARIVEGDPGKVICKEAERIKPAAVVMGTRGRSLIQRFGSTIPLSETSSYHVTEASSCDFLQCATGKCW*

>Glyma04g01390.3   sequence type=predicted peptide   gene model=Glyma04g01390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIGMETVMEEEEYNYREVRLPSLIAVVGEPELGRETGERRRGRDIIIAIDHGPNTKHAFDWALVHLCRLADTIHLVHAVSDLHNQVVYDITQGLMEKLAIEAFQVLMVKTVARIVEGDPGKVICKEAERIKPAAVVMGTRGRSLIQSVLQGSVGEYCFHHCKAAPVVIVPGKEAGDASIL*

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