SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G21620 | AT | Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:9248749-9249986 FORWARD LENGTH=193 | SoyBase | E_val: 2.00E-85 | ISS |
| GO:0002238 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin | SoyBase | N/A | ISS |
| GO:0009269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to desiccation | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF00582 | PFAM | Universal stress protein family | JGI | ISS | |
| UniRef100_D6BR58 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Response to dessication RD2 n=1 Tax=Jatropha curcas RepID=D6BR58_9ROSI | SoyBase | E_val: 3.00E-83 | ISS |
| UniRef100_I1JSN4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JSN4_SOYBN | SoyBase | E_val: 2.00E-152 | ISS |
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Glyma04g01390 not represented in the dataset |
Glyma04g01390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g012400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g01390.2 sequence type=transcript gene model=Glyma04g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACTTATGTTTGTTTAATTGTCTTATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGGTTTGGTTCAACAATCCCTCTATCTGAAACCAGCAGTTATCATGTTACTGAAGCATCTTCTTGTGATTTTCTTCAGTGTGCTACAGGGAAGTGTTGGTGAGTACTGCTTTCACCACTGTAAAGCAGCACCTGTTGTTATTGTTCCTGGAAAAGGTGTGCCATCGTTGCCTTAGTCTTTCTTTTCAACATTTTTTTCTTGCAGCCGAATATTAAAGGAGTTTCATTTCTTTGATTCACAGAGGCTGGAGATGCGTCAATCCTCTAGTCGAATTATGTTGTAAAAGGCTGTGTTTTTATTATCGCATTTGTTTTATCGTGTGTATCTATTATCAAATACTAGTGTGAAGATTGTTTCTAATTCATTAGAACAAGAAAAAAGAGCATCACATGCTGTGATTATTAATATTCTTTTCTGGAAAGTCACAATTGATTGGTTGCCCATGTTCCCATTTTCAAAAATCTAATTGTAACTATTAATTCCA >Glyma04g01390.3 sequence type=transcript gene model=Glyma04g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAAAAAGAAAAAATTAAGAGAAAATAAGTATAACGATGTTTTTTTTATTTGATTGAAAAGAAAAAAAAAAAGATAAATCATAAGAAAGTTAACTTCAATAAACAAAAAAATTGCTTTTCCTGTCTATCAAAAACATACATAGGATAAATGTTTTGAGCAATACCCTTAACTGGCCAAAAAAAAAAGTAACTTATGTTTGTTTAATTGTCTTATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGTGTGCTACAGGGAAGTGTTGGTGAGTACTGCTTTCACCACTGTAAAGCAGCACCTGTTGTTATTGTTCCTGGAAAAGAGGCTGGAGATGCGTCAATCCTCTAGTCGAATTATGTTGTAAAAGGCTGTGTTTTTATTATCGCATTTGTTTTATCGTGTGTATCTATTATCAAATACTAGTGTGAAGATTGTTTCTAATTCATTAGAACAAGAAAAAAGAGCATCACATGCTGTGATTATTAATATTCTTTTCTGGAAAGTCACAATTGATTGGTTGCCCATGTTCCCATTTTCAAAAATCTAATTGTAACTATTAATTCCACCACCATGGTCTGTCTCTGTTTGCTTTTACGAGTATATTTTCCATTGGATAAAATTGGTATAAAGG
>Glyma04g01390.1 sequence type=CDS gene model=Glyma04g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGGTTCCTTCCTTACTTTACTTACTCCACCACTTTTTTTTTGTCTCTTATTGTGGAAATTCATTTATCTTTTCTTTAATATTTTTTCAGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGTGTGCTACAGGGAAGTGTTGGTGAGTACTGCTTTCACCACTGTAAAGCAGCACCTGTTGTTATTGTTCCTGGAAAAGAGGCTGGAGATGCGTCAATCCTCTAG >Glyma04g01390.2 sequence type=CDS gene model=Glyma04g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGGTTTGGTTCAACAATCCCTCTATCTGAAACCAGCAGTTATCATGTTACTGAAGCATCTTCTTGTGATTTTCTTCAGTGTGCTACAGGGAAGTGTTGGTGA >Glyma04g01390.3 sequence type=CDS gene model=Glyma04g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTATAGGAATGGAGACAGTGATGGAAGAGGAAGAATACAACTATAGAGAAGTGAGGCTTCCTTCTCTGATAGCAGTGGTGGGCGAGCCAGAGCTGGGGAGGGAAACAGGGGAAAGGAGAAGAGGAAGGGACATAATAATAGCCATAGATCATGGCCCCAATACCAAACATGCTTTCGATTGGGCTCTGGTTCACCTTTGCAGGCTCGCTGATACCATCCATCTCGTTCACGCCGTTTCCGACTTGCATAACCAAGTTGTCTACGACATAACCCAGGGTCTTATGGAGAAATTAGCCATTGAGGCTTTTCAAGTACTAATGGTGAAAACAGTAGCTCGAATTGTGGAAGGTGATCCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATCAAACCTGCAGCTGTGGTTATGGGGACCCGAGGCAGAAGCTTGATTCAAAGTGTGCTACAGGGAAGTGTTGGTGAGTACTGCTTTCACCACTGTAAAGCAGCACCTGTTGTTATTGTTCCTGGAAAAGAGGCTGGAGATGCGTCAATCCTCTAG
>Glyma04g01390.1 sequence type=predicted peptide gene model=Glyma04g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIGMETVMEEEEYNYREVRLPSLIAVVGEPELGRETGERRRGRDIIIAIDHGPNTKHAFDWALVHLCRLADTIHLVHAVSGSFLTLLTPPLFFCLLLWKFIYLFFNIFSDLHNQVVYDITQGLMEKLAIEAFQVLMVKTVARIVEGDPGKVICKEAERIKPAAVVMGTRGRSLIQSVLQGSVGEYCFHHCKAAPVVIVPGKEAGDASIL* >Glyma04g01390.2 sequence type=predicted peptide gene model=Glyma04g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIGMETVMEEEEYNYREVRLPSLIAVVGEPELGRETGERRRGRDIIIAIDHGPNTKHAFDWALVHLCRLADTIHLVHAVSDLHNQVVYDITQGLMEKLAIEAFQVLMVKTVARIVEGDPGKVICKEAERIKPAAVVMGTRGRSLIQRFGSTIPLSETSSYHVTEASSCDFLQCATGKCW* >Glyma04g01390.3 sequence type=predicted peptide gene model=Glyma04g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIGMETVMEEEEYNYREVRLPSLIAVVGEPELGRETGERRRGRDIIIAIDHGPNTKHAFDWALVHLCRLADTIHLVHAVSDLHNQVVYDITQGLMEKLAIEAFQVLMVKTVARIVEGDPGKVICKEAERIKPAAVVMGTRGRSLIQSVLQGSVGEYCFHHCKAAPVVIVPGKEAGDASIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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