Glyma04g01380 - SoyBase

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Report for Sequence Feature Glyma04g01380

Feature Type:	gene_model
Chromosome:	Gm04
Start:	871735
stop:	874191
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39230	AT	Annotation by Michelle Graham. TAIR10: NmrA-like negative transcriptional regulator family protein \| chr4:18266024-18267604 REVERSE LENGTH=308	SoyBase	E_val: 2.00E-180	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0032442	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phenylcoumaran benzylic ether reductase activity	SoyBase	N/A	ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF62	Panther	EPIMERASE-RELATED	JGI		ISS
PF05368	PFAM	NmrA-like family	JGI		ISS
UniRef100_Q9SDZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Isoflavone reductase homolog 2 n=1 Tax=Glycine max RepID=Q9SDZ0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SDZ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone reductase homolog 2 n=1 Tax=Glycine max RepID=Q9SDZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g01380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g012300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01380

Limit To All Plant Sequences

>Glyma04g01380.2   sequence type=transcript   gene model=Glyma04g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGAAATACATTGGTTTATGGGAAGAGAGCAAGGCAGGAAGTCAGTGTTTATAAAACGACAGTAGGAGCCTGGTCTGGTCGGTGTGGCACTCAAACATTGTTTGTTGTAGGAAGAGGAATCTTGAGAAATGGCAGGGGACAGCAAGAGCAAGATTCTGTTCATCGGAGGGACTGGTTACATCGGAAAATTCATCGTGGAAGCCAGCGCCAAAGCTGGCCACCCAACTTTCCTTTTGGTGAGGGAGTCCACTCTCTCCAACCCCGCAAAATCACCCCTCATCGACAATTTCAAAGGCCTCGGTGTCAATCTTGTTTTAGGAGATCTATACGATCACCAAAGTTTGGTGAGTGCTATAAAGCAGGTCGATGTGGTAATTTCTACTGTAGGACACCTGCAGCTAGCTGATCAAGATAAGATCATTTCTGCAATTAAAGAAGCAGGAAATGTTAAGAAGTTCTATCCATCTGAGTTTGGAAATGATGTGGACCGGACTCATGCAGTTGAACCAGCCAAGTCTGCATTTGCAACAAAGGCCAAAGTTCGCCGAGCTATTGAGGCTGAAGGAATTCCCTTCACTTATGTGTCAAGCAACTTCTTTGCTGGTTACTTCCTGCCCAACTTGTCACAGCCTGGAGCCACAGCTGCCCCCAGAGACAGAGTTATTATCCTAGGAGATGGAAACCCCAAAGCTGTTTTTAACAAGGAAGAGGATATTGGAACTTATACAATCAATTCTGTGGATGATCCAAGAACCTTGAACAAAATTCTCTACATTAGACCACCAGCTAATACCTTGTCGTTTAATGAGCTTGTTACTCTCTGGGAGGGAAAGATTGGTAAAACTCTTGAAAGAATCTATGTTCCAGAAGAACAACTCCTGAAGCAAATTGAAGGTTAGTAAGTGATCATTATTCAGGTTATGTGCTGGATTTAACAGTGATAACTTATTTCCTTCTTTTTTCAGAGTCCGCACCACCCGTGAATGTGATCCTGTCAATTAACCACTCTTCTTATGTAAAGGGGGATCATACTAACTTTGAAATTGAGTCTTCTTTTGGAGTGGAAGCTTCAGCTCTATATCCTGATGTGAAATACATCACTGTGGATGAGTACCTTAATCAGTTTGTCTAAGGTGCAAAGCCTAGCTGATAAGTTTGTTTAATTGGTAAAACTTTGTTTTCTAAATAAAGAGAATCATGTAGTAAGACTGAATTGCTGCATGTGCTCCTCAAAAGAACAATGTATGAAATACCTATGCTATGCTATATGCTATGATACCTTTATTACATGCATATTGGTGTCATCGATTTTAATTTTATTTAAGTTCTATCACACGAATC

Coding sequences of Glyma04g01380

Limit To All Plant Sequences

>Glyma04g01380.1   sequence type=CDS   gene model=Glyma04g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGGGACAGCAAGAGCAAGATTCTGTTCATCGGAGGGACTGGTTACATCGGAAAATTCATCGTGGAAGCCAGCGCCAAAGCTGGCCACCCAACTTTCCTTTTGGTGAGGGAGTCCACTCTCTCCAACCCCGCAAAATCACCCCTCATCGACAATTTCAAAGGCCTCGGTGTCAATCTTGTTTTAGGAGATCTATACGATCACCAAAGTTTGGTGAGTGCTATAAAGCAGGTCGATGTGGTAATTTCTACTGTAGGACACCTGCAGCTAGCTGATCAAGATAAGATCATTTCTGCAATTAAAGAAGCAGGAAATGTTAAGAAGTTCTATCCATCTGAGTTTGGAAATGATGTGGACCGGACTCATGCAGTTGAACCAGCCAAGTCTGCATTTGCAACAAAGGCCAAAGTTCGCCGAGCTATTGAGGCTGAAGGAATTCCCTTCACTTATGTGTCAAGCAACTTCTTTGCTGGTTACTTCCTGCCCAACTTGTCACAGCCTGGAGCCACAGCTGCCCCCAGAGACAGAGTTATTATCCTAGGAGATGGAAACCCCAAAGCTGTTTTTAACAAGGAAGAGGATATTGGAACTTATACAATCAATTCTGTGGATGATCCAAGAACCTTGAACAAAATTCTCTACATTAGACCACCAGCTAATACCTTGTCGTTTAATGAGCTTGTTACTCTCTGGGAGGGAAAGATTGGTAAAACTCTTGAAAGAATCTATGTTCCAGAAGAACAACTCCTGAAGCAAATTGAAGAGTCCGCACCACCCGTGAATGTGATCCTGTCAATTAACCACTCTTCTTATGTAAAGGGGGATCATACTAACTTTGAAATTGAGTCTTCTTTTGGAGTGGAAGCTTCAGCTCTATATCCTGATGTGAAATACATCACTGTGGATGAGTACCTTAATCAGTTTGTCTAA

>Glyma04g01380.2   sequence type=CDS   gene model=Glyma04g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGGGACAGCAAGAGCAAGATTCTGTTCATCGGAGGGACTGGTTACATCGGAAAATTCATCGTGGAAGCCAGCGCCAAAGCTGGCCACCCAACTTTCCTTTTGGTGAGGGAGTCCACTCTCTCCAACCCCGCAAAATCACCCCTCATCGACAATTTCAAAGGCCTCGGTGTCAATCTTGTTTTAGGAGATCTATACGATCACCAAAGTTTGGTGAGTGCTATAAAGCAGGTCGATGTGGTAATTTCTACTGTAGGACACCTGCAGCTAGCTGATCAAGATAAGATCATTTCTGCAATTAAAGAAGCAGGAAATGTTAAGAAGTTCTATCCATCTGAGTTTGGAAATGATGTGGACCGGACTCATGCAGTTGAACCAGCCAAGTCTGCATTTGCAACAAAGGCCAAAGTTCGCCGAGCTATTGAGGCTGAAGGAATTCCCTTCACTTATGTGTCAAGCAACTTCTTTGCTGGTTACTTCCTGCCCAACTTGTCACAGCCTGGAGCCACAGCTGCCCCCAGAGACAGAGTTATTATCCTAGGAGATGGAAACCCCAAAGCTGTTTTTAACAAGGAAGAGGATATTGGAACTTATACAATCAATTCTGTGGATGATCCAAGAACCTTGAACAAAATTCTCTACATTAGACCACCAGCTAATACCTTGTCGTTTAATGAGCTTGTTACTCTCTGGGAGGGAAAGATTGGTAAAACTCTTGAAAGAATCTATGTTCCAGAAGAACAACTCCTGAAGCAAATTGAAGGTTAG

Predicted protein sequences of Glyma04g01380

Limit To All Plant Sequences

>Glyma04g01380.1   sequence type=predicted peptide   gene model=Glyma04g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGDSKSKILFIGGTGYIGKFIVEASAKAGHPTFLLVRESTLSNPAKSPLIDNFKGLGVNLVLGDLYDHQSLVSAIKQVDVVISTVGHLQLADQDKIISAIKEAGNVKKFYPSEFGNDVDRTHAVEPAKSAFATKAKVRRAIEAEGIPFTYVSSNFFAGYFLPNLSQPGATAAPRDRVIILGDGNPKAVFNKEEDIGTYTINSVDDPRTLNKILYIRPPANTLSFNELVTLWEGKIGKTLERIYVPEEQLLKQIEESAPPVNVILSINHSSYVKGDHTNFEIESSFGVEASALYPDVKYITVDEYLNQFV*

>Glyma04g01380.2   sequence type=predicted peptide   gene model=Glyma04g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGDSKSKILFIGGTGYIGKFIVEASAKAGHPTFLLVRESTLSNPAKSPLIDNFKGLGVNLVLGDLYDHQSLVSAIKQVDVVISTVGHLQLADQDKIISAIKEAGNVKKFYPSEFGNDVDRTHAVEPAKSAFATKAKVRRAIEAEGIPFTYVSSNFFAGYFLPNLSQPGATAAPRDRVIILGDGNPKAVFNKEEDIGTYTINSVDDPRTLNKILYIRPPANTLSFNELVTLWEGKIGKTLERIYVPEEQLLKQIEG*

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