Glyma04g01360 - SoyBase

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Report for Sequence Feature Glyma04g01360

Feature Type:	gene_model
Chromosome:	Gm04
Start:	863727
stop:	866220
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21600	AT	Annotation by Michelle Graham. TAIR10: endoplasmatic reticulum retrieval protein 1B \| chr2:9243550-9244579 FORWARD LENGTH=195	SoyBase	E_val: 4.00E-104	ISS
GO:0006890	GO-bp	Annotation by Michelle Graham. GO Biological Process: retrograde vesicle-mediated transport, Golgi to ER	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005801	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cis-Golgi network	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1688	KOG	Golgi proteins involved in ER retention (RER)	JGI		ISS
PTHR10743	Panther	RER1 PROTEIN	JGI		ISS
PF03248	PFAM	Rer1 family	JGI		ISS
UniRef100_B7FGH1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein RER1B n=1 Tax=Medicago truncatula RepID=B7FGH1_MEDTR	SoyBase	E_val: 4.00E-102	ISS
UniRef100_C6SWC6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWC6_SOYBN	SoyBase	E_val: 3.00E-139	ISS

Expression Patterns of Glyma04g01360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01360

Paralog	Evidence	Comments
Glyma06g01400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g012100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01360

Limit To All Plant Sequences

>Glyma04g01360.3   sequence type=transcript   gene model=Glyma04g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAATTTAAGTATAAAGTTTTACGTAAGGAGAGTAAATCCAATTTTGTTTATGTAGATCAAATTCAGCTTCAATTGGAATATACTGTTTTAATCTAGCCTGGGAAGGGTATAGATGGTGAGGCTGAGCTGAACGCAGTAAGCACTAAGGAGTAGCGAGTATTGGCTGATACTTGCACCCTCTTAACAATAACATGAGACAGAGAAAGGGTTGACGGAAAGGAAAACCAAATCAAACCCAACCCACCTTGTCCGATCTGCCACCAGGTGTGGTTGTTGTGATTTGAATGGAGGCAAGTGGAGGTGGCGGTGGCGGTGCTTCACCGTCTGCACCAGTGAAGCAATATCTGCACGATTTCTCGAAGCTGTTTCAGTACTATCTGGATAAATCCACTCCACATTCCACGTACAGATGGATTGGGACTTTTGTGATAGCATCCATCTACGTTTTACGCGTTGTTTATGTGCAGGGGTTTTACATTGTCTCTTATGGCCTCGGAATCTACCTTCTGAATCTCTTGATTGGTTTTCTCTCCCCTTTGGTCGATCCAGAGCTCGATCCCTCCGATTCCCCTTTGCTTCCCACCAAAGGCTCCGATGAGTTCAAACCCTTCATTCGCCGCCTCCCCGAGTTCAAGTTCTGGTATTCTTTCACGAAGGCTCTCTGCATAGCATTTGTGATGACTTTTTTTTCCCTGTTTGATGTTCCTGTCTTTTGGCCTATATTACTCTGTTACTGGTTTGTTCTCTTTGTCCTTACAATGAGACGCCAAGTTGCACACATGATGAAATACAAATATATCCCCTTCAACTTGGGGAAGCAGAAGTATAGCGGTAAGAAATCTTCTGCAAGTAGCAGTGGCTCTCGTGCAGACTGAAACTTGCTTCTCACGATTCAAAGATCTACTTAGTTAGGTTTTGTGAACATTCAGGGTAGTTAATTCCCCCCCTTTCTATGAAAGAATTTGTATTCATGGTATTATGGATGCCAGTATGCATTATGCAGTTACAGAAAATCTTAATGTCCACTCGTTTTATTATACATGAAGAATTGGTGATTGATAGTGAATCTCATTGTCGGTACACATGTTATTGATTGGATTTTTCTTGTAAATCTCAGCTTGTATTGTGAATTTGTGATGCTGTAATTTTTCCTTGCCCGGTAGCTTCTATCTCAATATTAAGGCAAAGTTTATCTAT

Coding sequences of Glyma04g01360

Limit To All Plant Sequences

>Glyma04g01360.2   sequence type=CDS   gene model=Glyma04g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCAAGTGGAGGTGGCGGTGGCGGTGCTTCACCGTCTGCACCAGTGAAGCAATATCTGCACGATTTCTCGAAGCTGTTTCAGTACTATCTGGATAAATCCACTCCACATTCCACGTACAGATGGATTGGGACTTTTGTGATAGCATCCATCTACGTTTTACGCGTTGTTTATGTGCAGGGGTTTTACATTGTCTCTTATGGCCTCGGAATCTACCTTCTGAATCTCTTGATTGGTTTTCTCTCCCCTTTGGTCGATCCAGAGCTCGATCCCTCCGATTCCCCTTTGCTTCCCACCAAAGGCTCCGATGAGTTCAAACCCTTCATTCGCCGCCTCCCCGAGTTCAAGTTCTGGTATTCTTTCACGAAGGCTCTCTGCATAGCATTTGTGATGACTTTTTTTTCCCTGTTTGATGTTCCTGTCTTTTGGCCTATATTACTCTGTTACTGGTTTGTTCTCTTTGTCCTTACAATGAGACGCCAAGTTGCACACATGATGAAATACAAATATATCCCCTTCAACTTGGGGAAGCAGAAGTATAGCGGTAAGAAATCTTCTGCAAGTAGCAGTGGCTCTCGTGCAGACTGA

>Glyma04g01360.3   sequence type=CDS   gene model=Glyma04g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCAAGTGGAGGTGGCGGTGGCGGTGCTTCACCGTCTGCACCAGTGAAGCAATATCTGCACGATTTCTCGAAGCTGTTTCAGTACTATCTGGATAAATCCACTCCACATTCCACGTACAGATGGATTGGGACTTTTGTGATAGCATCCATCTACGTTTTACGCGTTGTTTATGTGCAGGGGTTTTACATTGTCTCTTATGGCCTCGGAATCTACCTTCTGAATCTCTTGATTGGTTTTCTCTCCCCTTTGGTCGATCCAGAGCTCGATCCCTCCGATTCCCCTTTGCTTCCCACCAAAGGCTCCGATGAGTTCAAACCCTTCATTCGCCGCCTCCCCGAGTTCAAGTTCTGGTATTCTTTCACGAAGGCTCTCTGCATAGCATTTGTGATGACTTTTTTTTCCCTGTTTGATGTTCCTGTCTTTTGGCCTATATTACTCTGTTACTGGTTTGTTCTCTTTGTCCTTACAATGAGACGCCAAGTTGCACACATGATGAAATACAAATATATCCCCTTCAACTTGGGGAAGCAGAAGTATAGCGGTAAGAAATCTTCTGCAAGTAGCAGTGGCTCTCGTGCAGACTGA

Predicted protein sequences of Glyma04g01360

Limit To All Plant Sequences

>Glyma04g01360.2   sequence type=predicted peptide   gene model=Glyma04g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEASGGGGGGASPSAPVKQYLHDFSKLFQYYLDKSTPHSTYRWIGTFVIASIYVLRVVYVQGFYIVSYGLGIYLLNLLIGFLSPLVDPELDPSDSPLLPTKGSDEFKPFIRRLPEFKFWYSFTKALCIAFVMTFFSLFDVPVFWPILLCYWFVLFVLTMRRQVAHMMKYKYIPFNLGKQKYSGKKSSASSSGSRAD*

>Glyma04g01360.3   sequence type=predicted peptide   gene model=Glyma04g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEASGGGGGGASPSAPVKQYLHDFSKLFQYYLDKSTPHSTYRWIGTFVIASIYVLRVVYVQGFYIVSYGLGIYLLNLLIGFLSPLVDPELDPSDSPLLPTKGSDEFKPFIRRLPEFKFWYSFTKALCIAFVMTFFSLFDVPVFWPILLCYWFVLFVLTMRRQVAHMMKYKYIPFNLGKQKYSGKKSSASSSGSRAD*

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