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Report for Sequence Feature Glyma04g01355

Feature Type:gene_model
Chromosome:Gm04
Start:860561
stop:862510
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g01355
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48530AT Annotation by Michelle Graham. TAIR10: SNF1-related protein kinase regulatory subunit gamma 1 | chr3:17987559-17989592 FORWARD LENGTH=424 SoyBaseE_val: 8.00E-22ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13780Panther AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT JGI ISS
PTHR13780:SF13Panther AMP-ACTIVATED PROTEIN KINASE-RELATED JGI ISS
PF00571PFAM CBS domain JGI ISS
UniRef100_B9RH65UniRef Annotation by Michelle Graham. Most informative UniRef hit: AMP-activated protein kinase, gamma regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9RH65_RICCO SoyBaseE_val: 3.00E-114ISS
UniRef100_UPI000233A69CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A69C related cluster n=1 Tax=unknown RepID=UPI000233A69C SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g01355
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g01355 not represented in the dataset
Glyma04g01355 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01355
ParalogEvidenceComments
Glyma06g01391 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01355 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g012000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g01355
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g01355
>Glyma04g01355.1   sequence type=CDS   gene model=Glyma04g01355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCTCGGAAAATTGCGGACGTGTTGAAGGTCTCGGAGGGTGGGTTAGAAGACAAGAAGCAAAAGAACCGCAGTTCTAGCCTCCACAAAGATGATAACCAAAACCAACACGTGCAGATTGATTCTGGCTTTGCCCTCCAACAATTTCTTGATCACATACCCATTATTTCAATAGCTGGCATAAAAAATTCACCTGTTTTGGAATTGAAAGCTGGAGACAGTATAATGGATGCAATTCATATGTTGTACGAAAACGACATCTTTTCTGCAGCAATTGTGGATATGTCAGACATAAGGTTTTCAGATCGTTATATTGGTCTCATTGATTTTACAAGCATGGTTCTTTGGTGCCTTGAGAACAATGGCTTTTTCTCCATCCTGGATCAGGTTCCTCAGATTGGGCAAACCAAGGTTAGCGAGTCGGCTAAGTCATTCCTCTATGAACCATTTTTCCCAGTAAGCATGGATGACACGGTTTTGCATGCTTTGCTACTTCTCTCTAAGCATCGAGTGCACGTTTTGCCAGTCATACAGGAACCTGAAGCTGGATTTATCGGTTTTGCTACACAGAATGCAGTAGTCGAGCACCTTCTTCAATCAAGTGAACTAGAGTGGTTTGATAACATTGCAGATAAGAACTTATCAGATTTCCGATTTGAAAGCCAAGAAAATCCTAGTTGTGTATATGGGGACCAAACTGTTGCAAATGCATTAGATATGCTCTGGCAAAACCAAACTTGTCCGGTTGCTGTTGTAGATCGACAAACTAAGAAGCTCCTGGGTAATGTGAGGAACAGTGACGTTTATAATCTTGCTACAATATTAATGATTTTAACTGTGGAAGAATTCATTCACATAGAGACTGACAAAGTAGAAACTGAACGAGCCATTGAACATGACCATGGGGTTTTTCTCACAGCAGGAAGTCTCCAGCTTAAAAACAGCTTCATACCCAGAATGGACTTGCCCGTTGCAAACAAGGAAAATGAAACACTCAAGCAAACAATGGAGCATACAACTGAGACATTTGCACCTCCAAATATGAATTCTAGCATTAATGGAGGTGGGTTTTTCGAATTTGTCTTAGAGCAAAGTGGATGTCAAGTGAAATATGGAGCTATTATTCATAATCATTGA
Predicted protein sequences of Glyma04g01355
>Glyma04g01355.1   sequence type=predicted peptide   gene model=Glyma04g01355   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSRKIADVLKVSEGGLEDKKQKNRSSSLHKDDNQNQHVQIDSGFALQQFLDHIPIISIAGIKNSPVLELKAGDSIMDAIHMLYENDIFSAAIVDMSDIRFSDRYIGLIDFTSMVLWCLENNGFFSILDQVPQIGQTKVSESAKSFLYEPFFPVSMDDTVLHALLLLSKHRVHVLPVIQEPEAGFIGFATQNAVVEHLLQSSELEWFDNIADKNLSDFRFESQENPSCVYGDQTVANALDMLWQNQTCPVAVVDRQTKKLLGNVRNSDVYNLATILMILTVEEFIHIETDKVETERAIEHDHGVFLTAGSLQLKNSFIPRMDLPVANKENETLKQTMEHTTETFAPPNMNSSINGGGFFEFVLEQSGCQVKYGAIIHNH*






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