Glyma04g01350 - SoyBase

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Report for Sequence Feature Glyma04g01350

Feature Type:	gene_model
Chromosome:	Gm04
Start:	855690
stop:	860313
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g01350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39210	AT	Annotation by Michelle Graham. TAIR10: Glucose-1-phosphate adenylyltransferase family protein \| chr4:18260332-18263181 FORWARD LENGTH=521	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008878	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-1-phosphate adenylyltransferase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
KOG1322	KOG	GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase	JGI		ISS
PTHR22572	Panther	SUGAR-1-PHOSPHATE GUANYL TRANSFERASE	JGI		ISS
PTHR22572:SF10	Panther	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE	JGI		ISS
PF00483	PFAM	Nucleotidyl transferase	JGI		ISS
UniRef100_I1JSM8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=I1JSM8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JSM8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=I1JSM8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g01350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g01350

Paralog	Evidence	Comments
Glyma06g01380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g01350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g011900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g01350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g01350

Limit To All Plant Sequences

>Glyma04g01350.3   sequence type=transcript   gene model=Glyma04g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAATACTTATCAAAACCATATAAGATTTTTCTCGTGAGGGGTCTGGCTCACAAGCCAATAAAGGCAACCTCTAGTACCTTCATCACCACTCGATCGCATTAAAAGTCTAATAATTGACCTTCAATAATCTTAAAAATAAAAAATCACTGTGTGATTGATTCTCCAGATTTCCACTTTATTGCACACTTATAACTTAATTAATTTAATCCTCTTCAGGTTCACCTTCCTTGGTGGCAGGTTTGCAAGAACTCTAAACATTTGATCCATCACCATCTTCTTAGCAGTGAGGTGAAGTGAGGTGACTGCAATGGCTTCTGCTTGTGTGACCTTGAAATCCAATACCCATTTAGCAAACTCTGAGAAGGGCTTTCTAGGAGAAAGAATAAAAGGTGGCTTCAACAACAGTGCCTTGGTAATGAATCAGTTGGCTATACGTTCTAGAAGCCACAAGAGGGTGAAACATGGTGTTGGTGTTGTATCTGCTGTTCTCACTTCAAACAATGCCAAAGAATCACTGACCTTGCAAGTGCCTTCCTTTTTAAGAAGAAGGGCTGATCCAAAAAATGTTATTTCCATCATATTGGGAGGAGGACCTGGGACACAACTCTTTCCTCTCACCAAACGTGCTGCCACACCTGCGGTTCCTGTGGGTGGATGCTACAGGCTTATAGACATCCCTATGAGCAACTGCCTCAACAGTGGCATCAACAAAATATTTGTGCTGACACAGTTCAACTCTGCATCCCTCAACCGTCACATTGCCCGCACCTATTTTGGAAATGGCATCAACTTTGGGGATGGGATTGTGGAGGTTCTGGCGGCTACTCAAACACCAGGAGAGGCTGGAAAGAATTGGTTCCAAGGAACTGCAGATGCTGTGAGGCAATTCACTTGGGTATTTGAGGATGCCAAGAATACAAATGTTGAGAATGTATTGATCTTGGCTGGAGATCATCTATATCGTATGGATTACATGGACCTTGTGCAGAGTCACGTTGATAGAAATGCTGATATTACAGTTTCATGTGCTGCTGTGGGTGACAGCCGTGCATCAGATTATGGATTGGTTAAAGTAGATGACAGAGGCCGCATCATTCAATTTTCTGAAAAACCAAATGGTGATGATCTGAAAGCAATGCAAGCAGATACCTCTCTTCTTGGGTTGTCTCCCCAAGATGCATTGAAGTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGACAGATGTTTTACTCAATCTTCTGAAATGGAGATATCCTACCTCCAATGACTTCGGATCTGAAATCATCCCTGCAGCTGTGAGGGATCACGATGTCCAATCGTATTTTTTTGAAGACTATTGGGAAGACATTGGAACGATAAAATCGTTTTACGATGCTAACTTGGCCCTTACTGAAGAGAGTCACAAGTTTGAATTTTATGACCCCAAGATTCCCATTTACACATCTCCAGGATTCTTACCACCAACAAAGATTGACAAATGCCAGATTGTGGATGCTATTATTTCCCATGGATGTTTCCTGCGAGAATGCACAGTCCAACACTCCATTGTGGGTGAACGTTCACGTTTGGATTATGGTGTTGAGCTCCTGGACACTGTAATGATGGGAGCAGACTATTACCAAACTGAATCTGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTCCCAATTGGTATTGGAAGGAATACCAAAATTAGAAACTGTATTATTGACAAGAATGCTAAGATCGGGAAAGATGTCATCATCGCAAACAAAGATGGCGTTCAAGAAGCAGATAGACCAGAAGATGGATTCTACATTCGATCAGGAATCACCATCATAATGGAGAAGGCAACCATAGAAGATGGCACTATCGTATAAATGGATAGCTCATTTCTGGGCTGATTATCCAAAGGCGCTGGAAGAGGAATGCTCCCATCTTTGGGGACAGAAGGGTATCTGTTTGCAATGCTGTGTTACAATGGAGGAAGCAGCACATCACCCCATTTGCTATATGTAAAATAGAAGGCTCCCCCACTACTCAATACATGTAAAAATAGAATGAATAAAACCATGAAAATCAAGATGCATGAGGAGTAAATAAATTAAAGGGCTGACCCTGAGCTAGCTACAAAGTTGCTTTACCCCCTTGTAAAAGACACTTTCTAAATTATTTGTATTACTAAGGTATCAGTGAATGGCTGAATTGATTCATTGGCATCATCTTTCTGTTTTCTGTTTGCTATTATACGTGAACTGAAGCCCCTACGTAATCTTAAATTTAACGAGCATGTGATGAAAAT

Coding sequences of Glyma04g01350

Limit To All Plant Sequences

>Glyma04g01350.2   sequence type=CDS   gene model=Glyma04g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCTTGTGTGACCTTGAAATCCAATACCCATTTAGCAAACTCTGAGAAGGGCTTTCTAGGAGAAAGAATAAAAGGTGGCTTCAACAACAGTGCCTTGGTAATGAATCAGTTGGCTATACGTTCTAGAAGCCACAAGAGGGTGAAACATGGTGTTGGTGTTGTATCTGCTGTTCTCACTTCAAACAATGCCAAAGAATCACTGACCTTGCAAGTGCCTTCCTTTTTAAGAAGAAGGGCTGATCCAAAAAATGTTATTTCCATCATATTGGGAGGAGGACCTGGGACACAACTCTTTCCTCTCACCAAACGTGCTGCCACACCTGCGGTTCCTGTGGGTGGATGCTACAGGCTTATAGACATCCCTATGAGCAACTGCCTCAACAGTGGCATCAACAAAATATTTGTGCTGACACAGTTCAACTCTGCATCCCTCAACCGTCACATTGCCCGCACCTATTTTGGAAATGGCATCAACTTTGGGGATGGGATTGTGGAGGTTCTGGCGGCTACTCAAACACCAGGAGAGGCTGGAAAGAATTGGTTCCAAGGAACTGCAGATGCTGTGAGGCAATTCACTTGGGTATTTGAGGATGCCAAGAATACAAATGTTGAGAATGTATTGATCTTGGCTGGAGATCATCTATATCGTATGGATTACATGGACCTTGTGCAGAGTCACGTTGATAGAAATGCTGATATTACAGTTTCATGTGCTGCTGTGGGTGACAGCCGTGCATCAGATTATGGATTGGTTAAAGTAGATGACAGAGGCCGCATCATTCAATTTTCTGAAAAACCAAATGGTGATGATCTGAAAGCAATGCAAGCAGATACCTCTCTTCTTGGGTTGTCTCCCCAAGATGCATTGAAGTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGACAGATGTTTTACTCAATCTTCTGAAATGGAGATATCCTACCTCCAATGACTTCGGATCTGAAATCATCCCTGCAGCTGTGAGGGATCACGATGTCCAATCGTATTTTTTTGAAGACTATTGGGAAGACATTGGAACGATAAAATCGTTTTACGATGCTAACTTGGCCCTTACTGAAGAGAGTCACAAGTTTGAATTTTATGACCCCAAGATTCCCATTTACACATCTCCAGGATTCTTACCACCAACAAAGATTGACAAATGCCAGATTGTGGATGCTATTATTTCCCATGGATGTTTCCTGCGAGAATGCACAGTCCAACACTCCATTGTGGGTGAACGTTCACGTTTGGATTATGGTGTTGAGCTCCTGGACACTGTAATGATGGGAGCAGACTATTACCAAACTGAATCTGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTCCCAATTGGTATTGGAAGGAATACCAAAATTAGAAACTGTATTATTGACAAGAATGCTAAGATCGGGAAAGATGTCATCATCGCAAACAAAGATGGCGTTCAAGAAGCAGATAGACCAGAAGATGGATTCTACATTCGATCAGGAATCACCATCATAATGGAGAAGGCAACCATAGAAGATGGCACTATCGTATAA

>Glyma04g01350.3   sequence type=CDS   gene model=Glyma04g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCTTGTGTGACCTTGAAATCCAATACCCATTTAGCAAACTCTGAGAAGGGCTTTCTAGGAGAAAGAATAAAAGGTGGCTTCAACAACAGTGCCTTGGTAATGAATCAGTTGGCTATACGTTCTAGAAGCCACAAGAGGGTGAAACATGGTGTTGGTGTTGTATCTGCTGTTCTCACTTCAAACAATGCCAAAGAATCACTGACCTTGCAAGTGCCTTCCTTTTTAAGAAGAAGGGCTGATCCAAAAAATGTTATTTCCATCATATTGGGAGGAGGACCTGGGACACAACTCTTTCCTCTCACCAAACGTGCTGCCACACCTGCGGTTCCTGTGGGTGGATGCTACAGGCTTATAGACATCCCTATGAGCAACTGCCTCAACAGTGGCATCAACAAAATATTTGTGCTGACACAGTTCAACTCTGCATCCCTCAACCGTCACATTGCCCGCACCTATTTTGGAAATGGCATCAACTTTGGGGATGGGATTGTGGAGGTTCTGGCGGCTACTCAAACACCAGGAGAGGCTGGAAAGAATTGGTTCCAAGGAACTGCAGATGCTGTGAGGCAATTCACTTGGGTATTTGAGGATGCCAAGAATACAAATGTTGAGAATGTATTGATCTTGGCTGGAGATCATCTATATCGTATGGATTACATGGACCTTGTGCAGAGTCACGTTGATAGAAATGCTGATATTACAGTTTCATGTGCTGCTGTGGGTGACAGCCGTGCATCAGATTATGGATTGGTTAAAGTAGATGACAGAGGCCGCATCATTCAATTTTCTGAAAAACCAAATGGTGATGATCTGAAAGCAATGCAAGCAGATACCTCTCTTCTTGGGTTGTCTCCCCAAGATGCATTGAAGTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGACAGATGTTTTACTCAATCTTCTGAAATGGAGATATCCTACCTCCAATGACTTCGGATCTGAAATCATCCCTGCAGCTGTGAGGGATCACGATGTCCAATCGTATTTTTTTGAAGACTATTGGGAAGACATTGGAACGATAAAATCGTTTTACGATGCTAACTTGGCCCTTACTGAAGAGAGTCACAAGTTTGAATTTTATGACCCCAAGATTCCCATTTACACATCTCCAGGATTCTTACCACCAACAAAGATTGACAAATGCCAGATTGTGGATGCTATTATTTCCCATGGATGTTTCCTGCGAGAATGCACAGTCCAACACTCCATTGTGGGTGAACGTTCACGTTTGGATTATGGTGTTGAGCTCCTGGACACTGTAATGATGGGAGCAGACTATTACCAAACTGAATCTGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTCCCAATTGGTATTGGAAGGAATACCAAAATTAGAAACTGTATTATTGACAAGAATGCTAAGATCGGGAAAGATGTCATCATCGCAAACAAAGATGGCGTTCAAGAAGCAGATAGACCAGAAGATGGATTCTACATTCGATCAGGAATCACCATCATAATGGAGAAGGCAACCATAGAAGATGGCACTATCGTATAA

Predicted protein sequences of Glyma04g01350

Limit To All Plant Sequences

>Glyma04g01350.2   sequence type=predicted peptide   gene model=Glyma04g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASACVTLKSNTHLANSEKGFLGERIKGGFNNSALVMNQLAIRSRSHKRVKHGVGVVSAVLTSNNAKESLTLQVPSFLRRRADPKNVISIILGGGPGTQLFPLTKRAATPAVPVGGCYRLIDIPMSNCLNSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGIVEVLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDYGLVKVDDRGRIIQFSEKPNGDDLKAMQADTSLLGLSPQDALKSPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVRDHDVQSYFFEDYWEDIGTIKSFYDANLALTEESHKFEFYDPKIPIYTSPGFLPPTKIDKCQIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELLDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIANKDGVQEADRPEDGFYIRSGITIIMEKATIEDGTIV*

>Glyma04g01350.3   sequence type=predicted peptide   gene model=Glyma04g01350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASACVTLKSNTHLANSEKGFLGERIKGGFNNSALVMNQLAIRSRSHKRVKHGVGVVSAVLTSNNAKESLTLQVPSFLRRRADPKNVISIILGGGPGTQLFPLTKRAATPAVPVGGCYRLIDIPMSNCLNSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGIVEVLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDYGLVKVDDRGRIIQFSEKPNGDDLKAMQADTSLLGLSPQDALKSPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVRDHDVQSYFFEDYWEDIGTIKSFYDANLALTEESHKFEFYDPKIPIYTSPGFLPPTKIDKCQIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELLDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIANKDGVQEADRPEDGFYIRSGITIIMEKATIEDGTIV*

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